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Evosep Biosystems
vPro-MS enables identification of human-pathogenic viruses from patient samples by untargeted proteomicsPublication2024Marica Grossegesse, Fabian Horn, Andreas Kurth, Peter Lasch, Andreas Nitsche, Joerg DoellingerRobert Koch Institute, Centre for Biological Threats and Special Pathogens: Highly Pathogenic Viruses (ZBS 1), WHO Collaboration Center for Emerging Treats and Special Pathogens60 SPDBruker timsTOF HT, Thermo Orbitrap Astral

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60-spdbruker-timstof-ht thermo-orbitrap-astralIdentification of druggable targets from the interactome of the Androgen Receptor and Serum Response Factor pathways in prostate cancerPublication2024Haleema Azam, Colin Veale, Kim Zitzmann, Simone Marcone, William M. Gallagher, Maria PrencipeCancer Biology and Therapeutics Laboratory, Conway Institute of Biomolecular and Biomedical Research, University College Dublin30 SPDtimsTOF Pro

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30-spdtimstof-proBrain Proteome Profiling Reveals Common and Divergent Signatures in Parkinson’s Disease, Multiple System Atrophy, and Progressive Supranuclear PalsyPublication2024Fiona Dick, Gard Aasmund Skulstad Johanson, Ole-Bjørn Tysnes, Guido Alves, Christian Dölle & Charalampos TzoulisNeuro-SysMed Center of Excellence for Clinical Research in Neurological Diseases, Department of Neurology, Haukeland University Hospital, Bergen, Norway30 SPDThermo Orbitrap Eclipse Tribid

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30-spdthermo-orbitrap-eclipse-tribidAn Inflection Point in High-Throughput Proteomics with Orbitrap Astral: Analysis of Biofluids, Cells, and TissuesPublication2024Nathan G. Hendricks, Santosh D. Bhosale, Angel J. Keoseyan, Josselin Ortiz, Aleksandr Stotland, Saeed Seyedmohammad, Chi D. L. Nguyen, Jonathan T. Bui, Annie Morandian, Susan M. Mockus, Jennifer E. van EykPrecision Biomarker Laboratories, Cedars-Sinai Medical Center, Beverly Hills, California, United StatesThermo Orbitrap Astral

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thermo-orbitrap-astralPeptide clustering enhances large-scale analyses and reveals proteolytic signatures in mass spectrometry dataPublication2024Erik Hartman, Fredrik Forsberg, Sven Kjellström, Jitka Petrlova, Congyu Luo, Aaron Scott, Manoj Puthia, Johan Malmström & Artur SchmidtchenDivision of Dermatology and Venereology, Department of Clinical Sciences, Lund University, Lund, Sweden30 SPDBruker timsTOF HT, timsTOF Pro

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30-spdbruker-timstof-ht timstof-proMachine learning-based analysis identifies and validates serum exosomal proteomic signatures for the diagnosis of colorectal cancer Refining Spatial Proteomics by Mass Spectrometry: An Efficient Workflow Tailored for Archival TissuePublication2024Haofan Yin, Jinye Xie, Shan Xing, Xiaofang Lu, Yu Yu, Yong Ren, Jian Tao, Guirong He, Lijun Zhang, Xiaopeng Yuan, Zheng Yang, Zhijian HuangDepartment of Pathology, The Seventh Affiliated Hospital of Sun Yat-Sen University, Shenzhen, Guangdong, China30 SPDtimsTOF Pro

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30-spdtimstof-proDistinct protein patterns related to postnatal development in small for gestational age preterm infantsPublication2024Eva R. Smit, Michelle Romijn, Pieter Langerhorst, Carmen van der Zwaan, Hilde van der Staaij, Joost Rotteveel, Anton H. van Kaam, Suzanne F. Fustolo-Gunnink, Arie J. Hoogendijk, Wes Onland, Martijn J. J. Finken & Maartje van den BiggelaarDepartment of Molecular Hematology, Sanquin Research, Amsterdam, the Netherlands30 SPDThermo Orbitrap Fusion Lumos

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30-spdthermo-orbitrap-fusion-lumosSynaptic synergy of T cell receptor and interleukin 2 receptor in 2 CD8+ T cellsPublication2024Jesusa Capera, Ashwin K Jainarayanan, Salvatore Valvo, Lina Chen, Steven N Quayle, Raymond J Moniz , Anish Suri, Michael L DustinThe Kennedy Institute of Rheumatology, Nuffield Department of Orthopaedics, Rheumatology and Musculoskeletal Sciences, University of Oxford, Oxford, United KingdomtimsTOF Pro

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timstof-proThe Comparative Analysis of Peptides in Enteral Nutrition Products and Foods for Special Medical PurposesPublication2024Hao Li, Chenlu Fang, Yushan Hu, Jing Xu, Wei Zhao and Li LiState Key Laboratory of Food Science and Resources, Jiangnan University, Wuxi, ChinaThermo Orbitrap Exploris 120

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thermo-orbitrap-exploris-120Multi-omics analysis reveals the impact of influenza a virus host adaptation on immune signatures in pig tracheal tissuePublication2024Chrysillis Hellemann Polhaus, Charlotte Kristensen, Betina Lyngfeldt Henriksen, Yaolei Zhang, Louise Brogaard, Cathrine Agnete Larsen, Ramona Trebbien, Lars Erik Larsen, Kalogeropoulos Kalogeropoulos, Ulrich auf dem Keller, Kerstin SkovgaardDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Kongens Lyngby, DenmarkThermo Orbitrap Exploris 480

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thermo-orbitrap-exploris-480Endosomal Chemokine Receptor Signalosomes Regulate Central Mechanisms Underlying Cell MigrationPublication2024Hyunggu Hahn, Carole Daly, John Little IV, Nicole A Perry-Hauser, Emmanuel Flores-Espinoza, Asuka Inoue, Bianca Plouffe, Alex Rojas Bie ThomsenDepartment of Molecular Pathobiology, New York University College of Dentistry, New York, United States15 SPDThermo Q-Exactive Plus Hybrid Quadrupole-Orbitrap

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15-spdthermo-q-exactive-plus-hybrid-quadrupole-orbitrapIdentification of a biomarker to predict doxorubicin/cisplatin chemotherapy efficacy in osteosarcoma patients using primary, recurrent and metastatic specimensPublication2024Qiong Ma, Jin Sun, Qiao Liu, Jin Fu, Yanhua Wen, Fuqin Zhang, Yonghong Wu, Xiaoyu Zhang, Li Gong, Wei ZhangDepartment of Pathology, Tangdu Hospital, Air Force Medical University, Xi'an 710038, ChinaThermo Orbitrap Exploris 480

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thermo-orbitrap-exploris-480GroEL/ES chaperonin unfolds then encapsulates a nascent protein on the ribosomePublication2024Alžběta Roeselová, Sarah L. Maslen, Jessica Zhiyun He, Gabija Jurkeviciute, J. Mark Skehel, Radoslav Enchev, David BalchinProtein Biogenesis Laboratory, The Francis Crick Institute, London, UK30 SPDThermo Orbitrap Fusion Lumos

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30-spdthermo-orbitrap-fusion-lumosDistinct protein patterns related to postnatal development in small for gestational age preterm infantsPublication2024Eva R. Smit, Michelle Romijn, Pieter Langerhorst, Carmen van der Zwaan, Hilde van der Staaij, Joost Rotteveel, Anton H. van Kaam, Suzanne F. Fustolo-Gunnink, Arie J. Hoogendijk, Wes Onland, Martijn J. J. Finken & Maartje van den BiggelaarDepartment of Molecular Hematology, Sanquin Research, Amsterdam, the Netherlands30 SPDThermo Orbitrap Fusion Lumos

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30-spdthermo-orbitrap-fusion-lumosThe proteomic landscape of in vitro cultured endothelial cells across vascular bedsPublication2024Stijn A. Groten, Eva R. Smit, Maartje van den Biggelaar & Arie J. HoogendijkDepartment of Molecular Hematology, Sanquin Research, Amsterdam, The Netherlands15 SPDThermo Orbitrap Fusion Lumos

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15-spdthermo-orbitrap-fusion-lumosThe nonphototrophic hypocotyl 3 (NPH3) domain protein NRL5 is a trafficking-associated GTPase essential for drought resistancePublication2024Neha Upadhyay-Tiwari, Xin-Jie Huang, Yi-Chen Lee, Shashi Kant Singh, Chuan-Chi Hsu, Shih-Shan Huang, and Paul E. VersluesInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, TaiwanExtended methodBruker timsTOF HT

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extended-methodbruker-timstof-htAn Automated High-throughput Affinity Capture-Mass Spectrometry Platform with Data-Independent AcquisitionPublication2024Hui Jing, Paul L. Richardson, Gregory K. Potts, Sameera Senaweera, Violeta L Marin, Ryan McClure, Adam Banlasan, Hua Tang, James E. Kath, Renze Ma, Jon D. WilliamsDiscovery Research, AbbVie, Inc., 1 North Waukegan Rd., North Chicago, Illinois, United States30 SPDThermo Orbitrap Exploris 480

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30-spdthermo-orbitrap-exploris-480Deep Visual Proteomics reveals DNA replication stress as a hallmark of Signet Ring Cell CarcinomaPublication2024Sonja Kabatnik, Xiang Zheng, Georgios Pappas, Sophia Steigerwald, Matthew P Padula, Matthias MannNNF Center for Protein Research, Faculty of Health Science, University of Copenhagen, Copenhagen, DenmarkWhisper 40 SPDThermo Orbitrap Astral

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whisper-40spdthermo-orbitrap-astralCentral role of SUMOylation in the regulation of chromatin interactions and transcriptional outputs of the androgen receptor in prostate cancer cellsPublication2024Kaisa-Mari Launonen, Vera Varis, Niina Aaltonen, Einari A Niskanen, Markku Varjosalo, Ville Paakinaho, Jorma J PalvimoInstitute of Biomedicine, Faculty of Health Sciences, University of Eastern Finland, Kuopio, Finland60 SPDtimsTOF Pro

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60-spdtimstof-proProteostasis perturbation of N-Myc leveraging HSP70 mediated protein turnover improves treatment of neuroendocrine prostate cancerPublication2024Yuqiu Shen, Oleta T. Johnson, Gabriela Grigorean, Brett Phinney, Liangren Liu, Qiang Wei, Eva Corey, Clifford G. Tepper, Hong-Wu Chen, Christopher P. Evans, Marc A. Dall’Era, Allen C. Gao, Jason E. Gestwicki & Chengfei LiuDepartment of Urologic Surgery, University of California, Davis, CA, USABruker timsTOF HT

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bruker-timstof-htStage-dependent phosphoproteome remodeling of Parkinson’s disease blood cellsPublication2024Giorgia Massacci, Veronica Venafra, Maximilian Zwiebel, Maria Wahle, Rocco Cerroni, Jacopo Bissacco, Livia Perfetto, Vito Michienzi, Alessandro Stefani, Nicola Biagio Mercuri, Tommaso Schirinzi, Francesca SaccoDepartment of Biology, University of Rome Tor Vergata, Rome, ItalyBruker timsTOF Ultra

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bruker-timstof-ultraWhole genome sequencing, proteomics, and function characterization of the Sinclair Nanopig™ for (bio) pharmaceuticals safety assessmentPublication2024Yafei Chen, Wendell P. DavisAltasciencestimsTOF Pro 2

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timstof-pro-2A non-autonomous protein quality control mechanism targeting tau aggregate propagationPublication2024Nina Schulzea, Michal Strzalaa, Michelle Kocia, Farnusch Kaschania, Markus Kaisera, Michael Erkelenzc, Sebastian Schlueckerc, Melisa Merdanovica, Simon Poepseld, Doris Hellerschmieda, Steve Burstonf and Michael EhrmannCenter of Medical Biotechnology, Faculty of Biology, University Duisburg-Essen, Germany60 SPDThermo Orbitrap Fusion Lumos

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60-spdthermo-orbitrap-fusion-lumosCryoprotectant-specific alterations in the proteome of Siberian sturgeon spermatozoa induced by cryopreservationPublication2024Natalia Kodzik, Andrzej Ciereszko, Sylwia Judycka, Mariola Słowińska, Bożena Szczepkowska, Bianka Świderska & Mariola A. DietrichDepartment of Gamete and Embryo Biology, Institute of Animal Reproduction and Food Research, Polish Academy of Sciences, Olsztyn, Poland15 SPDThermo Orbitrap Exploris 480

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15-spdthermo-orbitrap-exploris-480Comparison of the Proteome of Huh7 Cells Transfected with Hepatitis B Virus Subgenotype A1, with or without G1862TPublication2024Kiyasha Padarath, Aurélie Deroubaix, Previn Naicker, Stoyan Stoychev and Anna KramvisHepatitis Virus Diversity Unit, Department of Internal Medicine, School of Clinical Medicine, Faculty of Health Science, University of Witwatersrand, Johannesburg, South Africa

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De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experimentsPublication2024Sam P. B. van Beljouw, Marcin Skwark, Andreas Hougaard Laustsen, Stan J. J. Brouns, Anne Ljungers, Erwin M. Schoof, Jeroen Van Goey, Ulrich auf dem Keller, Karim Beguir, Nicolas Lopez Carranza and Timothy P. JenkinsInstaDeep Ltd, 5 Merchant Square, London, UKWhisper 40 SPDThermo Orbitrap Exploris 480

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whisper-40spdthermo-orbitrap-exploris-480Integrative metagenomic, transcriptomic, and proteomic analysis reveal the microbiota-host interplay in early-stage lung adenocarcinoma among non-smokersPublication2024Yaohui Sun, Zhiming Gan, Xiaojin Wang, Jian Liu, Wei Zhong, Zhiyan Zhang, Jiebin Zuo, Hang Zhong, Xiuting Huang, Zhixiang Yan & Qingdong CaoDepartment of Thoracic Surgery and Lung Transplantation, The Fifth Affiliated Hospital of Sun Yat-Sen University, Guangdong, China30 SPDThermo Orbitrap Fusion Lumos

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30-spdthermo-orbitrap-fusion-lumosRoughness affects the response of human fibroblasts and macrophages to sandblasted abutmentsPublication2024Francisco Romero-Gavilán, Carlos Arias-Mainer, Andreia Cerqueira, David Peñarrocha-Oltra, Juan Carlos Bernabeu-Mira, Iñaki García-Arnáez, Félix Elortza, María Muriach, Mariló Gurruchaga, Isabel Goñi & Julio SuayDepartment of Industrial Systems Engineering and Design, Universitat Jaume I, Castellón de la Plana, SpaintimsTOF Pro

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timstof-proComparison of the Amyloid Plaque Proteome in Down Syndrome, Early-Onset Alzheimer’s Disease and Late-Onset Alzheimer’s DiseasePublication2024Mitchell Martá-Ariza, Dominique F Leitner, Evgeny Kanshin, Jianina Suazo, Ana Giusti Pedrosa, Manon Thierry, Edward B. Lee, Orrin Devinsky, Eleanor Drummond, Juan Fortea, Alberto Lleó, Beatrix Ueberheide, Thomas WisniewskiNew York University Grossman School of Medicine15 SPDThermo Q Exactive HF-X

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15-spdthermo-q-exactive-hf-xSenescent cancer-associated fibroblasts in pancreatic adenocarcinoma restrict CD8+ T cell activation and limit responsiveness to immunotherapy in micePublication2024Jason R. Pitarresi, Dikla Atias, Eliana Steinberg, Tirza Bidany-Mizrahi, Esther Forkosh, Lior H. Katz, Ofra Benny, Talia Golan, Matan Hofree, Sheila A. Stewart, Karine A. Atlan, Gideon Zamir, Ben Z. Stanger, Michael Berger & Ittai Ben-PorathDepartment of Developmental Biology and Cancer Research, Institute for Medical Research Israel-Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem, Israel15 SPDThermo Orbitrap Exploris 480

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15-spdthermo-orbitrap-exploris-480Privacy-Preserving Multi-center Differential Protein Abundance Analysis with FedProtPublication2024Julian Späth, Richard Röttger, Veit Schwämmle, Stefanie M. Hauck, Stefan Lichtenthaler, Axel Imhof, Matthias Mann, Christina Ludwig, Bernhard Kuster, Jan Baumbach, Olga ZolotarevaChair of Proteomics and Bioanalytics, TUM School of Life Sciences, Technical University of Munich, Freising, Germany30 SPDThermo Orbitrap Exploris 480, Thermo Orbitrap Fusion Lumos, Thermo Q Exactive HF, timsTOF Pro

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30-spdthermo-orbitrap-exploris-480 thermo-orbitrap-fusion-lumos thermo-q-exactive-hf timstof-proProteomic profile and predictive markers of outcome in patients with subarachnoid hemorrhagePublication2024Sara Diana Lolansen, Nina Rostgaard, Markus Harboe Olsen, Maud Eline Ottenheijm, Lylia Drici, Tenna Capion, Nicolas Hernandez Nørager, Nanna MacAulay & Marianne JuhlerDepartment of Neurosurgery, the Neuroscience Centre, Copenhagen University Hospital – Rigshospitalet, Copenhagen, DenmarkThermo Orbitrap Exploris 480

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thermo-orbitrap-exploris-480Substrate O-glycosylation actively regulates extracellular proteolysisPublication2024Elizabeta Madzharova, Fabio Sabino, Konstantinos Kalogeropoulos, Chiara Francavilla, Ulrich auf dem KellerDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Kongens Lyngby, DenmarkWhisper 80 SPDThermo Orbitrap Exploris 480

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whisper-80-spdthermo-orbitrap-exploris-480Glucocorticoid receptor controls atopic dermatitis inflammation via functional interactions with P63 and autocrine signaling in epidermal keratinocytesPublication2024Lisa M. Sevilla, Omar Pons-Alonso, Andrea Gallego, Mikel Azkargorta, Félix Elortza & Paloma PérezInstituto de Biomedicina de Valencia (IBV-CSIC), Department of Pathology and Molecular and Cell Therapy, Valencia, Spain30 SPDtimsTOF Pro

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30-spdtimstof-proA modular DNA origami nanocompartment for engineering a cell-free, protein unfolding and degradation pathwayPublication2024J. Huang, A. Jaekel, J. van den Boom, D. Podlesainski, M. Elnaggar, A. Heuer-Jungemann, M. Kaiser, H. Meyer & B. SaccàBionanotechnology, CENIDE and ZMB, University of Duisburg-Essen, Essen, Germany100 SPD, 60 SPD

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100-spd 60-spdPlasma proteome profiling for AKI biomarker candidates associated with first-line ART in people living with HIV in South AfricaPublication2024Rethabile J. Mokoenaa, Sylvia Fanucchib, Firdaus Nabeemeeahd, Ebrahim Variavad, Neil Martinsond, Ireshyn S. Govendera and Previn NaickeraNextGen Health, Council of Scientific and Industrial Research, Pretoria, Gauteng, South Africa60 SPD

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60-spdRobust proteome profiling of cysteine-reactive fragments using label-free chemoproteomicsPublication2024Aini Vuorinen, William J. McCarthy, Harry Wilders, Ioannis G. Riziotis, Antonie J. van der Zouwen, Jonathan Pettinger, Luke Nightingale, Peiling Chen, Andrew J. Powell, David House, Simon J. Boulton, J. Mark Skehel, Katrin Rittinger, Jacob T. BushCrick-GSK Biomedical LinkLabs, GSK, Gunnels Wood Road, Stevenage, Hertfordshire, UK30 SPD, 60 SPDtimsTOF Pro 2

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30-spd 60-spdtimstof-pro-2Unraveling the differential mechanisms of revascularization promoted by MSCs & ECFCs from adipose tissue or umbilical cord in a murine model of critical limb-threatening ischemiaPublication2024Marta Rojas-Torres, Lucía Beltrán-Camacho, Ana Martínez-Val, Ismael Sánchez-Gomar, Sara Eslava-Alcón, Antonio Rosal-Vela, Margarita Jiménez-Palomares, Esther Doiz-Artázcoz, Mario Martínez-Torija, Rafael Moreno-Luna, Jesper V. Olsen & Ma. Carmen Duran-RuizBiomedicine, Biotechnology and Public Health Department, University of Cadiz, Cadiz, Spain30 SPDThermo Orbitrap Exploris 480

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30-spdthermo-orbitrap-exploris-480The PP2A regulator IER5L supports prostate cancer progressionPublication2024Ianire Astobiza, Amaia Zabala-Letona, Marc Guiu, Mikel Azkargorta, Monika Gonzalez-Lopez, Nuria Macías-Cámara, Phuong Doan, Félix Elortza, Isabel Mendizabal, Jukka Westermack, Roger R. Gomis, Amaia Ercilla & Arkaitz CarracedoCenter for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Bizkaia Technology Park, Derio, Spain30 SPDtimsTOF Pro

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30-spdtimstof-proComparative Proteomics and Metabonomics Analysis of Different Diapause Stages Revealed a New Regulation Mechanism of Diapause in Loxostege sticticalis (Lepidoptera: Pyralidae)Publication2024Lijun Shao, Fangzheng Yue, Jinfu Fan, Qin Su, Hairui Liu, Quanyi Zhang and Linbo XuInstitute of Grassland Research, Chinese Academy of Agricultural Sciences, Hohhot, ChinaThermo Orbitrap Exploris 480

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thermo-orbitrap-exploris-480Differences in the cerebral amyloid angiopathy proteome in Alzheimer’s disease and mild cognitive impairmentPublication2024Dominique Leitner, Tomas Kavanagh, Evgeny Kanshin, Kaleah Balcomb, Geoffrey Pires, Manon Thierry, Jianina I. Suazo, Julie Schneider, Beatrix Ueberheide, Eleanor Drummond & Thomas WisniewskiCenter for Cognitive Neurology, New York University Grossman School of Medicine, New York, NY, USA15 SPDThermo Q Exactive HF

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15-spdthermo-q-exactive-hfNeddylation inhibition prevents acetaminophen-induced liver damage by enhancing the anabolic cardiolipin pathwayPublication2024Rubén Rodríguez-Agudo, Sofía Lachiondo-Ortega, Maria Mercado-Gómez, Teresa C. Delgado, Marina Porcelli, Igor Aurrekoetxea, James D. Sutherland, Rosa Barrio, Dimitris Xirodimas, Patricia Aspichueta, Felix Elortza, María L. Martínez-ChantarLiver Disease Lab, CIC bioGUNE, Basque Research and Technology Alliance, BRTA, Bizkaia, SpaintimsTOF Pro

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timstof-proFacing death: a multidisciplinary analysis of a Romano-Egyptian mummy mask at the Ny Carlsberg Glyptotek, CopenhagenPublication2024Tuuli Kasso, Jens Stenger, Caterina Zaggia, Gianluca Pastorelli, Max Ramsøe, Tina Ravnsborg, Ole N. Jensen, Elsa Yvanez, Chiara Spinazzi-Lucchesi, Matthew J. Collins & Cecilie BrønsNy Carlsberg Glyptotek, Copenhagen, Denmark60 SPDThermo Q Exactive HF

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60-spdthermo-q-exactive-hfProteomic analysis identifies dysregulated proteins in albuminuria: a South African pilot studyPublication2024Siyabonga Khoza, Jaya A. George, Previn Naicker, Stoyan H. Stoychev, June Fabian, Ireshyn S. GovenderDepartment of Chemical Pathology, National Health Laboratory Service and School of Pathology, University of the Witwatersrand, Faculty of Health Sciences, Johannesburg, South Africa60 SPD

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60-spdRepurposed 3D Printer Allows Economical and Programmable Fraction Collection for Proteomics of Nanogram Scale SamplesPublication2024Eduardo S. Kitano, Gareth NisbetYana Demyanenko, Katarzyna M Kowalczyk, Louisa Iselin, Stephen Cross, Alfredo Castello, Shabaz MohammedRosalind Franklin Institute, Harwell Campus, Didcot, United Kingdom30 SPDThermo Orbitrap Ascend Tribid

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30-spdthermo-orbitrap-ascend-tribidPopulation scale proteomics enables adaptive digital twin modelling in sepsisPublication2024Aaron M. Scott, Lisa Mellhammar, Erik Malmström, Axel Goch Gustafsson, Anahita Bakochi, Marc Isaksson, Tirthankar Mohanty, Louise Thelaus, Fredrik Kahn, Lars Malmström, Johan Malmström, Adam LinderDivision of Infection Medicine, Department of Clinical Sciences Lund, Faculty of Medicine, Lund University, Lund, Sweden60 SPDtimsTOF Pro 2

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60-spdtimstof-pro-2VfENko-Kae01 is a flagellum-specific jumbo phage infecting Klebsiella aerogenesPublication2024Kira Ranta, Mikael Skurnik & Saija KiljunenHuman Microbiome Research Program, Research Program Unit, Faculty of Medicine, University of Helsinki, Helsinki, Finland60 SPDtimsTOF Pro

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60-spdtimstof-proTowards routine proteome profiling of FFPE tissue: Insights from a 1,200 case pan-cancer studyPublication2024Lisa Hönikl, Vicki Butenschön, Rumyana Todorova, Hilka Rauert-Wunderlich, Matthew The, Andreas Rosenwald, Volker Heinemann, Julian Holch, Bernhard Meyer, Wilko Weichert, Carolin Mogler, Peer Hendrik-Kuhn, Bernhard KusterProteomics and Bioanalytics, School of Life Sciences, Technical University of Munich, Freising, Germany100 SPD, 15 SPD, 30 SPDThermo Orbitrap Exploris 480

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100-spd 15-spd 30-spdthermo-orbitrap-exploris-480Biophysical characteristics of NFkappaB-IkappaBalpha’s Intrinsically Disordered RegionsPublication2024Luis OlivaUniversity of California San Diego, CA, United StatesThermo Orbitrap Exploris 480

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thermo-orbitrap-exploris-480Early Holocene preservation differences between cortical and trabecular bone proteomesPublication2024Ragnheiður Diljá Ásmundsdóttir, Jakob Hansen, Zandra Fagernäs, Gaudry Troché, Jesper V. Olsen, Maria Saña Seguí, Frido WelkerGlobe Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark60 SPDBruker timsTOF fleX, Thermo Orbitrap Exploris 480

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60-spdbruker-timstof-flex thermo-orbitrap-exploris-480Culturing Conditions Dictate the Composition and Pathways Enrichment of Human and Rat Perirenal Adipose-Derived Stromal Cells’ SecretomesPublication2024Erika Pinheiro-Machado, Marijke M. Faas, Bart J. de Haan, Cyril Moers & Alexandra M. SminkDepartment of Pathology and Medical Biology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands30 SPDThermo Orbitrap Exploris 480

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30-spdthermo-orbitrap-exploris-480Quantitative measurement of lacritin in the tear fluid of patients with Dry Eye DiseasePublication2024Kyla Frenia, Ketan Dinghe, Yunxiang Fu, Jaclyn Sikora, Kathleen Garwood, Rick Mental, Dipanjan Pan, Kevin Xiao, Leanne LabriolaInnSight Technology Inc, Pittsburgh, Pennsylvania, United StatestimsTOF Pro 2

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timstof-pro-2Data for proteomic analysis of in situ digestion of alcohol-fixed cells for quantitative proteomicsPublication2024Atsushi Hatano, Masaki MatsumotoDepartment of Omics and Systems Biology, Graduate School of Medical and Dental Sciences, Niigata University, Ichibancho, Asahimachi-dori, Chuo-ku, Niigata City, Niigata, JapanThermo Orbitrap Exploris 480, Thermo Q-Exactive Plus Hybrid Quadrupole-Orbitrap

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thermo-orbitrap-exploris-480 thermo-q-exactive-plus-hybrid-quadrupole-orbitrapRhythmic variation in proteomics: challenges and opportuninites for statistical power and biomarker identificationPublication2024Matt Spick, Cheryl M. Isherwood, Lee Gethings, Hana Hassanin, Daan R. van der Veen, Debra J. Skene, Jonathan D. JohnstonSchool of Health Sciences, Faculty of Health and Medical Sciences, University of Surrey, Guildford, UK60 SPD

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60-spdDysregulation of Lipid Metabolism Serves as A Link Between Alzheimer’s and Cardiovascular Disease, As Witnessed in A Cross-Sectional StudyPublication2024Cristina Juarez-Alia1, Tamara Sastre-Oliva, Inés Perales-Sánchez, German Hernandez-Fernandez, Eduardo Chicano-Galvez, Ángela Peralbo-Molina, Felipe Madruga, Emilio Blanco-Lopez, Teresa Tejerina, María G. BarderasDepartment of Vascular Physiopathology, Hospital Nacional de Paraplejicos, SESCAM, Toledo, SpainBruker timsTOF fleX

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bruker-timstof-flexLocalized K63 ubiquitin signaling is regulated by VCP/p97 during oxidative stressPublication2024Austin O. Maduka, Sandhya Manohar, Matthew W. Foster, and Gustavo M. SilvaDepartment of Biology, Duke University, Durham, NC, USAThermo Orbitrap Astral, Thermo Orbitrap Exploris 480

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thermo-orbitrap-astral thermo-orbitrap-exploris-480Visfatin impact on the proteome of porcine luteal cells during implantationPublication2024Grzegorz Kopij, Marta Kiezun, Marlena Gudelska, Kamil Dobrzyn, Barbara Zarzecka, Edyta Rytelewska, Ewa Zaobidna, Bianka Swiderska, Agata Malinowska, Agnieszka Rak, Tadeusz Kaminski & Nina SmolinskaFaculty of Biology and Biotechnology, University of Warmia and Mazury in Olsztyn, Olsztyn, Poland30 SPDThermo Orbitrap Exploris 480

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30-spdthermo-orbitrap-exploris-480Spatial Proteomics of Single Hepatocytes with Multiplexed Data-Independent Acquisition (mDIA)Publication2024Marvin Thielert, Caroline A. M. Weiss, Matthias Mann & Florian A. RosenbergerProteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, GermanyWhisper 40 SPDBruker timsTOF SCP

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whisper-40spdbruker-timstof-scpNivolumab reaches brain lesions in patients with recurrent glioblastoma and induces T-cell activity and upregulation of checkpoint pathwaysPublication2024Filip Mundt, Vilde Pedersen, Matthias Mann, Ib Jarle Christensen, Jane Skjøth-Ramussen, Christina Westmose Yde, Bjarne Winther Kristensen, Hans Skovgaard Poulsen, Benedikte Hasselbalch, Inge Marie Svane, Ulrik Lassen, Sine Reker HadrupExperimental and Translational Immunology, Department of Health Technology, Technical University of Denmark, Kgs. Lyngby, Denmark30 SPDtimsTOF Pro

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30-spdtimstof-proDiscovery of a novel antifungal compound, ilicicolin K, through genetic activation of the ilicicolin biosynthetic pathway in Trichoderma reeseiPublication2024Isabella Burger, Matthias Schmal, Kathrin Peikert, Lukas Fourtis, Christoph Suster, Christian Stanetty, Dominik Schnalzer, Ruth Birner-Gruenberger, Robert L Mach, Astrid R. Mach-Aigner, Matthias Schittmayer, Christian ZimmermannInstitute of Chemical Technologies and Analytics, TU Wien, Vienna, AustriaWhisper 40 SPDtimsTOF Pro

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whisper-40spdtimstof-proSpatial proteomics of skeletal muscle using thin cryosections reveals metabolic adaptation at the muscle-tendon transition zonePublication2024Luisa Schmidt, Michael Saynisch, Christian Hoegsbjerg, Andreas Schmidt, Abigail Mackey, Jan-Wilm Lackmann, Stefan Müller, Manuel Koch, Bent Brachvogel, Michael Kjaer, Philipp Antczak, Marcus KrügerInstitute for Genetics, Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), Cologne, GermanyThermo Orbitrap Eclipse Tribid, timsTOF Pro 2

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thermo-orbitrap-eclipse-tribid timstof-pro-2Evolocumab as an immunomodulator in glioma: A window of opportunity trial evaluating PCSK9 inhibition to enhance surface MHC-I on tumorPublication2024Allan Friedman, Stephen Keir, Evan D. Buckley, James E. Herndon, Roger E. McLendon, John H. Sampson, Evan Calabrese, Giselle Y. Lopez, Gerald A. Grant, Anoop P. Patel, Chuan-Yuan Li, Peter E. Fecci, Mustafa KhasrawThe Preston Robert Tisch Brain Tumor Center at Duke University, Durham, NC, US100 SPD, 60 SPDThermo Orbitrap Astral

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100-spd 60-spdthermo-orbitrap-astralSingle cell proteomics by mass spectrometry reveals deep epigenetic insight into the actions of an orphan histone deacetylase inhibitorPublication2024Benjamin C. OrsburnThe Department of Pharmacology and Molecular Sciences, The Johns Hopkins University School of Medicine, Baltimore, MD, USA,100 SPD, 200 SPD, 30 SPD, 500 SPD, 60 SPDBruker timsTOF SCP

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100-spd 200-spd 30-spd 500-spd 60-spdbruker-timstof-scpHighly Repeatable Tissue Proteomics for Kidney Transplant Pathology: Technical and Biological Validation of Protein Analysis using LC-MS/MSPublication2024Rianne Hofstraat, Kristina Marx, Renata Blatnik, Nike Claessen, Aleksandra Chojnacka, Hessel PetersSengers, Sandrine Florquin, Jesper Kers, Garry CorthalsDepartment of Pathology, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands60 SPDBruker timsTOF HT

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60-spdbruker-timstof-htEnabling scalable single-cell proteomics by utilizing the unique analytical properties of the Evotip Pure with new Whisper Zoom methodsPoster2024Frederik Haugaard Vrdlovec Holck, David Hartlmayr, Anjali Seth, Danté Johnson, Ole B. Hørning, Dorte B. Bekker-Jensen, Nicolai BacheEvosep BiosystemsWhisper Zoom 120 SPD, Whisper Zoom 40 SPD, Whisper Zoom 80 SPDtimsTOF Pro 2

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whisper-zoom-120-spd whisper-zoom-40-spd whisper-zoom-80-spdtimstof-pro-2A complete and automated end-to-end sample preparation strategy for high-throughput and standardized proteomics with high sensitivityPoster2024Magnus Huusfeldt, Hope Cabalo Zisco, Gabriel Bracamontes, Dorte B. Bekker-Jensen, Nicolai BacheEvosep Biosystems100 SPD, 500 SPD, Whisper Zoom 40 SPD, Whisper Zoom 80 SPDBruker timsTOF HT

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100-spd 500-spd whisper-zoom-40-spd whisper-zoom-80-spdbruker-timstof-htStandardized, fully automated neat plasma and Mag-Net enrichment workflows enabled by the Evotip PurePoster2024Joel Vej-Nielsen, Magnus Huusfeldt, Ian D. Shoemaker, Stoyan Stoychev, Laurent Rieux, Dorte B. Bekker-Jensen, Nicolai BacheEvosep Biosystems200 SPD, 500 SPDBruker timsTOF HT

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200-spd 500-spdbruker-timstof-htScalability for high-throughput proteomics – Evotip Pure integration with the Biomek i5 liquid handlerApplication note2024Evosep BiosystemsEvosep Biosystems200 SPD, 500 SPDBruker timsTOF HT

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200-spd 500-spdbruker-timstof-htCost-efficient and scalable end-to-end workflow on the Opentrons OT-2 for neat plasma utilizing Evotip PureApplication note2024Evosep BiosystemsEvosep Biosystems100 SPD, 200 SPDBruker timsTOF HT

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100-spd 200-spdbruker-timstof-htEfficient proteomics with an automated sample preparation strategy leveraged by Evotip Pure and the AssayMAP BravoApplication note2024Evosep BiosystemsEvosep Biosystems100 SPD, 500 SPD, Whisper Zoom 40 SPD, Whisper Zoom 80 SPDBruker timsTOF HT

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100-spd 500-spd whisper-zoom-40-spd whisper-zoom-80-spdbruker-timstof-htA specialized method for high sensitivity with the Whisper Zoom 20 samples per day methodApplication note2024Evosep BiosystemsEvosep BiosystemsWhisper Zoom 20 SPDtimsTOF Pro 2

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whisper-zoom-20-spdtimstof-pro-2A specialized method for high sensitivity with the Whisper Zoom 40 samples per day methodApplication note2024Evosep BiosystemsEvosep BiosystemsWhisper Zoom 40 SPDtimsTOF Pro 2

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whisper-zoom-40-spdtimstof-pro-2A specialized method for high sensitivity with the Whisper Zoom 80 samples per day methodApplication note2024Evosep BiosystemsEvosep BiosystemsWhisper Zoom 80 SPDtimsTOF Pro 2

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whisper-zoom-80-spdtimstof-pro-2A specialized method for high sensitivity with the Whisper Zoom 120 samples per day methodApplication note2024Evosep BiosystemsEvosep BiosystemsWhisper Zoom 120 SPDtimsTOF Pro 2

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whisper-zoom-120-spdtimstof-pro-2Whisper ZoomApplication note2024Evosep BiosystemsEvosep BiosystemsWhisper Zoom 120 SPD, Whisper Zoom 20 SPD, Whisper Zoom 40 SPD, Whisper Zoom 80 SPDtimsTOF Pro 2

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whisper-zoom-120-spd whisper-zoom-20-spd whisper-zoom-40-spd whisper-zoom-80-spdtimstof-pro-2Unlocking the plasma proteomeApplication note2024Evosep BiosystemsEvosep Biosystems100 SPDThermo Orbitrap Astral

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100-spdthermo-orbitrap-astralWhisper Zoom drives scalable workflowsApplication note2024Evosep BiosystemsEvosep BiosystemsWhisper Zoom 120 SPD, Whisper Zoom 80 SPDtimsTOF Pro 2

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whisper-zoom-120-spd whisper-zoom-80-spdtimstof-pro-2Evotip Pure brings innovative sample storageApplication note2024Evosep BiosystemsEvosep BiosystemsWhisper Zoom 120 SPD, Whisper Zoom 80 SPDtimsTOF Pro 2

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whisper-zoom-120-spd whisper-zoom-80-spdtimstof-pro-2UBE2D3 facilitates NHEJ by orchestrating ATM signalling through multi-level control of RNF168Publication2024Daniel Salas-Lloret, Inge de Krijger, Nathalie Moatti, Ruben van der Lugt, Mattia Falcone, Aurora Cerutti, Onno B. Bleijerveld, Liesbeth Hoekman, Román González-Prieto & Jacqueline J. L. JacobsDivision of Oncogenomics, The Netherlands Cancer Institute, Amsterdam, the NetherlandsThermo Orbitrap Exploris 480

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thermo-orbitrap-exploris-480An automated workflow based on data independent acquisition for practical and high-throughput personalized assay development and minimal residual disease monitoring in multiple myeloma patientsPublication2024Jolein Gloerich, Vincent Bonifay, Hélène Caillon, Theo M. Luider, Sven Brehmer, Lennard Pfennig, Tharan Srikumar, Dennis Trede, Gary Kruppa, Thomas Dejoie, Martijn M. van Duijn, Alain J. van Gool, Joannes F.M. Jacobs, Hans J.C.T. WesselsLaboratory of Medical Immunology, Department of Laboratory Medicine, Radboud University Medical Center, Nijmegen, The Netherlands60 SPDtimsTOF Pro 2

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60-spdtimstof-pro-2Proteomic Characterisation of Placenta Tissue for Biomarker Discovery – Workflow Development and ApplicationPublication2024Tanja Peric, Selma Hevelius BounjaDepartment of biomedical engineering, Lund university, Lund, Sweden30 SPDBruker timsTOF HT

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30-spdbruker-timstof-htA co-culture system of macrophages with breast cancer tumoroids to study cell interactions and therapeutic responsesPublication2024Antonella Raffo-Romero, Lydia Ziane-Chaouche, Sophie Salomé-Desnoulez, Nawale Hajjaji, Isabelle Fournier, Michel Salzet, Marie DuhamelUniversité Lille, Inserm, CHU Lille, Laboratoire Protéomique, Réponse Inflammatoire Et Spectrométrie de Masse (PRISM), Equipe Labellisée Ligue Contre le Cancer, Lille, France60 SPDBruker timsTOF fleX

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60-spdbruker-timstof-flexDevelopment of an efficient, effective, and economical technology for proteome analysisPublication2024Katherine R. Martin, Ha T. Le, Ahmed Abdelgawad, Canyuan Yang, Guotao Lu, Jessica L. Keffer, Xiaohui Zhang, Zhihao Zhuang, Papa Nii Asare-Okai, Clara S. Chan, Mona Batish, Yanbao YuDepartment of Chemistry and Biochemistry, University of Delaware, Newark, DE, USAThermo Orbitrap Eclipse Tribid

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thermo-orbitrap-eclipse-tribidMulti Omics Applications in Biological SystemsPublication2024Cristian D. Gutierrez Reyes, Gerardo Alejo-Jacuinde, Benjamin Perez Sanchez, Jesus Chavez Reyes, Sherifdeen Onigbinde, Damir Mogut, Irma Hernández-Jasso, Denisse Calderón-Vallejo, J. Luis Quintanar, Yehia MechrefDepartment of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX, USAThermo Orbitrap Astral

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thermo-orbitrap-astralRapid Novor: Evosep One delivers high throughput and performance consistency in a clinical proteomics labCase study2024Evosep BiosystemsEvosep Biosystems60 SPD

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60-spdEngineering of TurboID-Wingless for the identification of Wingless interactors through in vivo proximity labellingPublication2024Ana-Miruna Androniciuc, Edward W. Tate, Jean-Paul VincentThe Francis Crick Institute, London, England, United Kingdom30 SPDThermo Orbitrap Fusion Lumos, timsTOF Pro 2

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30-spdthermo-orbitrap-fusion-lumos timstof-pro-2Circulating pre- and postprandial extracellular vesicle proteomic profilesPublication2024Alejandra P. Garza, Elisa Wider-Eberspächer, Lorena Morton, Marco van Ham, Éva Pállinger, Edit I. Buzás, Lothar Jänsch, Ildiko Rita DunayOtto-von-Guericke University Magdeburg, Magdeburg, Germany60 SPDtimsTOF Pro

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60-spdtimstof-proProteomic profiling reveals diagnostic signatures and pathogenic insights in multisystem inflammatory syndrome in childrenPublication2024Ulrikka Nygaard, Annelaura Bach Nielsen, Kia Hee Schultz Dungu, Lylia Drici, Mette Holm, Maud Eline Ottenheijm, Allan Bybeck Nielsen, Jonathan Peter Glenthøj, Lisbeth Samsø Schmidt, Dina Cortes, Inger Merete Jørgensen, Kjeld Schmiegelow, Matthias MannDepartment of Pediatrics and Adolescent Medicine, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark300 SPDThermo Orbitrap Exploris 480

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300-spdthermo-orbitrap-exploris-480High-throughput mass spectrometry maps the sepsis plasma proteome and differences in patient responsePublication2024Yuxin Mi, Katie L. Burnham, Philip D. Charles, Raphael Heilig, Iolanda Vendrell, Justin Whalley, Hew D. Torrance, David B. Antcliffe, Shaun M. May, Matt J. Neville, Georgina Berridge, Paula Hutton, Cyndi G. Geoghegan, Jayachandran RadhakrishnanWellcome Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Oxford, UK100 SPDtimsTOF Pro

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100-spdtimstof-proGlobal analysis of protein turnover dynamics in single cellsPublication2024Pierre Sabatier, Zilu Ye, Maico Lechner, Ulises H. Guzmán, Christian M. Beusch, Fabiana Izaguirre, Anjali Seth, Olga Gritsenko, Sergey Rodin, Karl-Henrik Grinnemo, Jesper V. OlsenNovo Nordisk Foundation Center for Protein Research, University of Copenhagen, DenmarkWhisper 40 SPDThermo Orbitrap Astral

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whisper-40spdthermo-orbitrap-astralAlphaDIA enables End-to-End Transfer Learning for Feature-Free ProteomicsPublication2024Patricia Skowronek, Vincenth Brennsteiner, Mikhail Lebedev, Marvin Thielert, Sophia Steigerwald, Mohamed Kotb, Tim Heymann, Xie-Xuan Zhou, Magnus Schwoerer, Maximilian T. Strauss, Constantin Ammar, Sander Willems, Wen-Feng Zeng, Matthias MannMax-Planck Institute for Biochemistry; Novo Nordisk Foundation Center for Protein Research, Germany60 SPD, Whisper 40 SPDtimsTOF Pro 2

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60-spd whisper-40spdtimstof-pro-2A novel hybrid high speed mass spectrometer allows rapid translation from biomarker candidates to targeted clinical tests using 15N labeled proteinsPublication2024Maria Wahle, Philip Remes, Vincent Albrecht, Johannes Bruno Mueller-Reif, Sophia Steigerwald, Lili Niu, Philip Loessl, Stevan Horning, Cristina Jacob, Matthias MannMax-Planck Institute for Biochemistry; Novo Nordisk Foundation Center for Protein Research, Germany30 SPD, 60 SPDThermo Orbitrap Astral, Thermo Orbitrap Exploris 480

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30-spd 60-spdthermo-orbitrap-astral thermo-orbitrap-exploris-480Elasticity Modification of Biomaterials Used in 3D Printing with an Elastin–Silk-like Recombinant ProteinPublication2024Violetta Cecuda-Adamczewska, Agnieszka Romanik-Chru´scielewska, Katarzyna Kosowska, Iwona Sokołowska, Natalia Łukasiewicz, Paulina Korycka, Katarzyna Florys-Jankowska, Agnieszka Zakrzewska, Michał Wszoła, Marta KlakFoundation of Research and Science Development, Warsaw, Poland15 SPDThermo Orbitrap Exploris 480

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15-spdthermo-orbitrap-exploris-480Hepatocellular RECK as a Critical Regulator of Metabolic Dysfunction-Associated Steatohepatitis DevelopmentPublication2024Ryan J. Dashek, Rory P. Cunningham, Christopher L. Taylor, Isabella Alessi, Connor Diaz, Grace M. Meers, Andrew A. Wheeler, Jamal A. Ibdah, Elizabeth J. Parks, Tadashi Yoshida, Bysani Chandrasekar, R. Scott RectorResearch Service, Harry S Truman Memorial Veterans Medical Center, Columbia30 SPDtimsTOF Pro 2

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30-spdtimstof-pro-2Deregulation of cellulose synthesis by site-directed mutagenesis of cellulose synthase leads to heightened bacterial cellulose productionPublication2024Daniel J. Upton, Heather Eastmond, Angharad Gatenby, Alexandra Lanot, Neil C. BruceCNAP, University of York, York, United Kingdom30 SPDBruker timsTOF HT

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30-spdbruker-timstof-htDataset for evaluation of the lauryl maltose neopentyl glycol assisted sample preparation methodPublication2024Ryo Konno, Masaki Ishikawa, Daisuke Nakajima, Yusuke Endo, Osamu Ohara, Yusuke KawashimaDepartment of Applied Genomics, Kazusa DNA Research Institute, Kisarazu, Chiba, JapanWhisper 80 SPDThermo Orbitrap Exploris 480

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whisper-80-spdthermo-orbitrap-exploris-480Broad proteomics analysis of seeding-induced aggregation of α-synuclein in M83 neurons reveals remodeling of proteostasis mechanisms that might contribute to Parkinson’s disease pathogenesisPublication2024Casey J. Lumpkin, Hiral Patel, Gregory K. Potts, Shilpi Chaurasia, Lauren Gibilisco, Gyan P. Srivastava, Janice Y. Lee, Nathan J. Brown, Patricia Amarante, Jon D. Williams, Eric Karran, Matthew Townsend, Dori Woods, Brinda RavikumarAbbVie, Cambridge Research Center, Cambridge, MA 02139, USA30 SPDThermo Orbitrap Fusion Lumos

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30-spdthermo-orbitrap-fusion-lumosBeet supplementation mitigates post-exercise inflammationPublication2024David C. Nieman, Camila A. Sakaguchi, James C. Williams, Fayaj A. Mulani, Patil Shivprasad Suresh, Ashraf M. Omar, Qibin ZhangHuman Performance Laboratory, Appalachian State University, North Carolina Research Campus, Kannapolis, NC, United StatesThermo Orbitrap Exploris 240

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thermo-orbitrap-exploris-240Antihypertensive effects of whey protein hydrolysate involve reshaping the gut microbiome in spontaneously hypertension ratsPublication2024Peipei Dou, Xiaoyi Li, Xiaoxiao Zou, Kai Wang, Lei Yao, Zhuo Sun, Hui Hong, Yongkang Luo, Yuqing TanKey Laboratory of Functional Dairy, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, ChinaThermo Orbitrap Exploris 480

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thermo-orbitrap-exploris-480A proteogenomic atlas of the human neural retinaPublication2024Michael Kwint, Jolein Gloerich, Hans J.C.T. Wessels, Elfride De Baere, Filip van Nieuwerburgh, Sarah De Keulenaer, Barbara Ferrari, Stefano Ferrari, Frauke Coppieters, Frans P.M. Cremers, Erwin van Wyk, Susanne Roosing, Erik de Vrieze, Peter A.C. ‘t HoenDepartment of Medical BioSciences, Radboud University Medical Center, Nijmegen, The Netherlands30 SPDtimsTOF Pro 2

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30-spdtimstof-pro-2Effect of hypercholesterolemia on circulating and cardiomyocyte-derived extracellular vesiclesPublication2024Alexander L. Hültenschmidt, Éva Pállinger, Edit I. Buzás, Ádám Zolcsák, Bálint Kiss, Tamás Bozó, Csilla Csányi, Nikolett Kósa, Miklós Kellermayer, Róbert Farkas, Gellért B. Karvaly, Kieran Wynne, David Matallanas, Péter Ferdinandy & Zoltán GiriczDepartment of Pharmacology and Pharmacotherapy, Semmelweis University, Budapest, Hungary30 SPD

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30-spdLongitudinal plasma proteomic analysis of 1117 hospitalized patients with COVID-19 identifies features associated with severity and outcomesPublication2024Arthur Viode, Kinga K. Smolen, Patrick van Zalm, David Stevenson, Meenakshi Jha, Kenneth Parker, Ofer Levy, Judith A. Steen, Hanno SteenDepartment of Pathology, Boston Children’s Hospital, Boston, MA, USA60 SPDtimsTOF Pro 2

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60-spdtimstof-pro-2A Novel Approach to Orthotopic Hepatocyte Transplantation Engineered With Liver Hydrogel for Fibrotic Livers, Enhancing Cell–Cell Interaction and AngiogenesisPublication2024Daisuke Udagawa, Shogo Nagata, Hiroshi Yagi, Kotaro Nishi, Toshinori Morisaku, Shungo Adachi, Yutaka Nakano, Masayuki Tanaka, Shutaro Hori, Yasushi Hasegawa, Yuta Abe, Minoru Kitago, Yuko KitagawaDepartment of Surgery, Keio University School of Medicine, Tokyo, JapanThermo Q Exactive HF-X

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thermo-q-exactive-hf-xFully automated workflow for integrated sample digestion and Evotip loading enabling high-throughput clinical proteomicsPublication2024Anders H. Kverneland, Florian Harking, Joel Mario Vej-Nielsen, Magnus Huusfeldt, Dorte B. Bekker-Jensen, Inge Marie Svane, Nicolai Bache, Jesper V. OlsenNovo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark100 SPD, 60 SPDThermo Orbitrap Astral, Thermo Orbitrap Exploris 480

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100-spd 60-spdthermo-orbitrap-astral thermo-orbitrap-exploris-480GLP-1-directed NMDA receptor antagonism for obesity treatmentPublication2024Luisa Sachs, Roger Moreno-Justicia, Rebecca Rohlfs, James C. Ford, Jonathan D. Douros, Brian Finan, Bryan Portillo, Kyle Grose, Jacob E. Petersen, Mette Trauelsen, Annette Feuchtinger, Richard D. DiMarchi, Thue W. Schwartz, Christoffer ClemmensenNovo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark30 SPDtimsTOF Pro 2

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30-spdtimstof-pro-2The balance between antiviral and antibacterial responses during M. Tuberculosis infection is regulated by the ubiquitin ligase CBLPublication2024Tina Truong, Kelsey Martin, Michelle Salemi, Abigail Ray, Brett S. Phinney, Bennett H. PennDepartment of Internal Medicine, University of California, Davis, Davis, California, United States of America30 SPD, 60 SPDBruker timsTOF HT, timsTOF Pro 2

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30-spd 60-spdbruker-timstof-ht timstof-pro-2NPEPPS Is a Druggable Driver of Platinum ResistancePublication2024Shahla Romal, Cailin Deiter, Tsung Wai Kan, Nathaniel Xander, Stephanie P. Araki, Molishree Joshi, Mahmood Javaid, Eric T. Clambey, Ryan Layer, Teemu D. Laajala, Sarah J. Parker, Tokameh Mahmoudi, Tahlita C.M. Zuiverloon, Dan Theodorescu, James C CostelloDepartment of Pharmacology, University of Colorado Anschutz Medical Campus, Aurora, ColoradoThermo Orbitrap Fusion Lumos

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thermo-orbitrap-fusion-lumosArginine deprivation enriches lung cancer proteomes with cysteine by inducing arginine-to-cysteine substitutantsPublication2024Chao Yang, Abhijeet Pataskar, Xiaodong Feng, Celia R. Berkers, Onno B. Bleijerveld, Reuven AgamiDivision of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the NetherlandsExtended methodThermo Orbitrap Exploris 480

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extended-methodthermo-orbitrap-exploris-480A multi-year longitudinal harmonization of quality controls in mass spectrometry proteomics core facilitiesPublication2024Christian Panse, Karel Stejskal, Thibaut Douché, Bérangère Lombard, Andrea Schuhmann, Damarys Loew, Karl Mechtler, Mariette Matondo, Mandy Rettel, Dominic Helm, Francis Impens, Simon Devos, Anna Shevchenko, Paolo Nanni, Eduard SabidóCentre for Genomic Regulation, The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain15 SPD, Whisper 20 SPDThermo Q Exactive HF

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15-spd whisper-20spdthermo-q-exactive-hfScalability for high-throughput proteomics – Evotip Pure integration with the Biomek i5 liquid handlerApplication note2024Evosep BiosystemsEvosep Biosystems200 SPD, 500 SPDBruker timsTOF HT

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200-spd 500-spdbruker-timstof-htCost-efficient and scalable end-to-end workflow on the Opentrons OT-2 for neat plasma utilizing Evotip PureApplication note2024Evosep BiosystemsEvosep Biosystems100 SPD, 200 SPDBruker timsTOF HT, SCIEX ZenoTOF 7600

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100-spd 200-spdbruker-timstof-ht sciex-zenotof-7600Efficient proteomics with an automated sample preparation strategy leveraged by Evotip Pure and the AssayMAP BravoApplication note2024Evosep BiosystemsEvosep Biosystems100 SPD, 500 SPD, Whisper Zoom 40 SPD, Whisper Zoom 80 SPDBruker timsTOF HT

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100-spd 500-spd whisper-zoom-40-spd whisper-zoom-80-spdbruker-timstof-htUnlocking the plasma proteome with Evotip Pure based, standardized and scalable workflowsApplication note2024Evosep BiosystemsEvosep Biosystems100 SPDThermo Orbitrap Astral

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100-spdthermo-orbitrap-astralWhisper Zoom drives scalable workflows for high-sensitivity applications through standardization and ease-of-useApplication note2024Evosep BiosystemsEvosep BiosystemsWhisper Zoom 120 SPD, Whisper Zoom 20 SPD, Whisper Zoom 40 SPD, Whisper Zoom 80 SPDtimsTOF Pro 2

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whisper-zoom-120-spd whisper-zoom-20-spd whisper-zoom-40-spd whisper-zoom-80-spdtimstof-pro-2Evotip Pure brings innovative sample storage and introduction to high-sensitivity and scalable LC-MS workflowsApplication note2024Evosep BiosystemsEvosep Biosystems

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Integrated proteogenomic analysis for inherited bone marrow failure syndromePublication2024Manabu Wakamatsu, Hideki Muramatsu, Hironori Sato, Masaki Ishikawa, Ryo Konno, Daisuke Nakajima, Motoharu Hamada, Yusuke Okuno, Yusuke Kawashima, Asahito Hama, Masafumi Ito, Hideto Iwafuchi, Yoshiyuki Takahashi & Osamu OharaDepartment of Applied Genomics, Kazusa DNA Research Institute, Kisarazu, Chiba, JapanThermo Orbitrap Exploris 480

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thermo-orbitrap-exploris-480Multi-omics integration highlights the role of ubiquitination in endometriosis fibrosisPublication2024Mengjie Yang, Hong Jiang, Xinyu Ding, Lu Zhang, Huaying Zhang, Jiahao Chen, Lijun Li, Xinqin He, Zhixiong Huang & Qionghua ChenClinical Medical Research Center for Gynecological Reproductive Health of Fujian Province, Laboratory of Research and Diagnosis of Gynecological Diseases of Xiamen City, China15 SPDtimsTOF Pro

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15-spdtimstof-proThe comprehensive SARS-CoV-2 ‘hijackome’ knowledge base— reveals signicant changes in host cell protein expression and activation by multiple SARS-CoV-2 variantsPublication2024Sini Huuskonen, Xiaonan Liu, Taras Redchuk, Kari Salokas, Rickard Lundberg, Sari Maljanen, Milja Belik, Arttu Reinholm, Pekka Kolehmainen, Garima Tripathi, Pia Laine, Sergei Belanov, Petri Auvinen, Maria Vartiainen, Larissa LaineThe university of Helsinki, Helsinki, Finland60 SPDtimsTOF Pro

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60-spdtimstof-proFASTMAP—a flexible and scalable immunopeptidomics pipeline for HLA- and antigen-specific T-cell epitope mapping based on artificial antigen-presenting cellsPublication2024Luisa Weisbrod, Luigi Capriotti, Marco Hofmann, Valerie Spieler, Herbert Dersch, Bernd Voedisch, Peter Schmidt, Susanne KnakeRecombinant Protein Discovery, CSL Innovation GmbH, Marburg, GermanyExtended methodThermo Orbitrap Exploris 240

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extended-methodthermo-orbitrap-exploris-240Deep Visual Proteomics advances human colon organoid models by revealing a switch to an in vivo-like phenotype upon xenotransplantationPublication2024Frederik Post, Annika Hausmann, Sonja Kabatnik, Sophia Steigerwald, Alexandra Brand, Ditte Lange Clement, Jonathan Skov, Theresa Louise Boye, Toshiro Sato, Casper Steenholdt, Andreas Mund, Ole Haagen Nielsen, Kim Bak Jensen, Matthias MannNovo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, DenmarkWhisper 40 SPDThermo Orbitrap Astral

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whisper-40spdthermo-orbitrap-astralComparative proteomic analysis of the ovarian fluid and eggs of Siberian sturgeonPublication2024Natalia Kodzik, Andrzej Ciereszko, Bożena Szczepkowska, Agata Malinowska & Mariola Aleksandra DietrichDepartment of Gamete and Embryo Biology, Institute of Animal Reproduction and Food Research, Polish Academy of Sciences, Poland15 SPDThermo Orbitrap Exploris 480

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15-spdthermo-orbitrap-exploris-480Unraveling the proteome landscape of mouse hematopoietic stem and progenitor compartment with high sensitivity low-input proteomicsPublication2024Nil Üresin, Valdemaras Petrosius, Pedro Aragon-Fernandez, Benjamin Furtwängler, Erwin M. Schoof, & Bo T. PorseThe Finsen Laboratory, Rigshospitalet, Faculty of Health Sciences, University of Copenhagen,Copenhagen, Denmark.Whisper 20 SPDThermo Orbitrap Eclipse Tribid

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whisper-20spdthermo-orbitrap-eclipse-tribidMachine learning strategies to tackle data challenges in mass spectrometry-based proteomicsPublication2024Ceder Dens, Charlotte Adams, Kris Laukens, Wout BittremieuxAdrem Data Lab, Department of Computer Science, University of Antwerp, Antwerpen, BelgiumtimsTOF Pro

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timstof-proDecrypting the molecular basis of cellular drug phenotypes by dose-resolved expression proteomicsPublication2024Stephan Eckert, Nicola Berner, Karl Kramer, Annika Schneider, Julian Müller, Severin Lechner, Sarah Brajkovic, Amirhossein Sakhteman, Christian Graetz, Jonas Fackler, Michael Dudek, Michael W. Pfaffl, Percy Knolle, Stephanie Wilhelm & Bernhard KusterProteomics and Bioanalytics, School of Life Sciences, Technical University of Munich, Freising, GermanyThermo Orbitrap Eclipse Tribid

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thermo-orbitrap-eclipse-tribidMass Spectrometry-Based Proteomics to Evaluate the Circulating Proteome in Idiopathic Pulmonary Fibrosis (IPF)Publication2024A. A. Menon, H. Mulder, M. L. Neely, F. Meissner, B. Gansen, P. Papavasileiou, C. Hesslinger, M. L. Salisbury, B. D. Southern, T. B. Leonard, J. L. ToddMedical University of South Carolina, Charleston, SC, United StatesThermo Orbitrap Exploris 480

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thermo-orbitrap-exploris-480Longitudinal Fluctuations in Protein Concentrations and Higher-Order Structures in the Plasma Proteome of Kidney Failure Patients Subjected to a Kidney TransplantPublication2024Sofia Kalaidopoulou Nteak, Franziska Völlmy, Marie V. Lukassen, Henk van den Toorn, Maurits A. den Boer, Albert Bondt, Sjors P. A. van der Lans, Pieter-Jan Haas, Arjan D. van Zuilen, Suzan H. M. Rooijakkers, and Albert J. R. HeckBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, The Netherlands30 SPDThermo Orbitrap Exploris 480

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30-spdthermo-orbitrap-exploris-480The proteomic profile is altered but not repaired after bariatric surgery in type 2 diabetes pigsPublication2024Karolina Ferenc, Michał Marcinkowski, Jarosław Olszewski, Paweł Kowalczyk, Tomaš Pilžys, Damian Garbicz, Naser Dib, Bianka Świderska, Piotr Matyba, Zdzisław Gajewski, Elżbieta Grzesiuk & Romuald ZabielskiCenter for Translational Medicine, Warsaw University of Life Sciences, Warsaw, Poland15 SPDThermo Orbitrap Exploris 480

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15-spdthermo-orbitrap-exploris-480Plasma/Serum Proteomics based on Mass SpectrometryPublication2024Yiying ZhuDepartment of Chemistry, Tsinghua University, Beijing, ChinaThermo Orbitrap Astral

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60-spdtimstof-proOptimization of protocols for blood-derived extracellular vesicles for studies in liver diseasesPublication2024Magnolia Martínez-Aguilar, María Camila Trillos-Almanza, Justina C. Wolters, Manon Buist-Homan, TransplantLines Investigators, Frederike van Vilsteren, Hans Blokzijl, Han MoshageDepartment of Gastroenterology and Hepatology, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands30 SPDThermo Orbitrap Exploris 480

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30-spdthermo-q-exactive-hfCharacterization of a Chimeric Resilin-Elastin Structural Protein Dedicated to 3D Bioprinting as a Bioink ComponentPublication2024Violetta Cecuda-Adamczewska, Agnieszka Romanik-Chruścielewska, Katarzyna Kosowska, Natalia Łukasiewicz, Iwona Sokołowska, Paulina Korycka, Katarzyna Florys-Jankowska, Agnieszka Zakrzewska, Michał Wszoła and Marta KlakFoundation of Research and Science Development, Warsaw, PolandThermo Orbitrap Exploris 480

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thermo-orbitrap-exploris-480Spatial Proteomics Reveals Alcohol-Induced Damages to the Crypts and Villi of the Mouse Small IntestinePublication2024Patil Shivprasad Suresh, Xinguo Sun, Zhanxiang Zhou, and Qibin ZhangCenter for Translational Biomedical Research, University of North Carolina at Greensboro, North Carolina Research Campus, Kannapolis, North Carolina, United States30 SPDThermo Orbitrap Exploris 240

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30-spdthermo-orbitrap-exploris-240O-linked glycosylations in human milk casein and major whey proteins during lactationPublication2024Martin Nørmark Thesbjerg, Katrine Overgaard Poulsen, Julie Astono, Nina Aagaard Poulsen, Lotte Bach Larsen, Søren Drud-Heydary Nielsen, Allan Stensballe, Ulrik Kræmer SundekildeDepartment of Food Science, Aarhus University, Agro Food Park 48, Aarhus N, Denmark60 SPDtimsTOF Pro 2

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60-spdtimstof-pro-2Mannose controls mesoderm specification and symmetry breaking in mouse gastruloidsPublication2024Chaitanya Dingare, Dominica Cao, Jenny Jingni Yang, Berna Sozen, Benjamin SteventonDeptartment of Genetics, University of Cambridge, Downing Site, Cambridge, UK500 SPDBruker timsTOF HT, Thermo Orbitrap Exploris 240

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500-spdbruker-timstof-ht thermo-orbitrap-exploris-240Theabrownin ameliorated lipid accumulation via modulating circadian rhythms in oleic acid-induced HepG2 cellsPublication2024Chunyan Zhao, Lei Zhao, Zelin Li, Yue Miao, Shuwen Lei, Bo Shan, Qiuping Wang, Chao Tan, Chunxiu Peng, Jiashun GongCollege of Food Science and Technology, Yunnan Agricultural University, Kunming, ChinaThermo Orbitrap Exploris 480

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thermo-orbitrap-exploris-480Increasing sustainability in palaeoproteomics by optimizing digestion times for large-scale archaeological bone analysesPublication2024Louise Le Meillour, Virginie Sinet-Mathiot, Ragnheiður Diljá Ásmundsdóttir, Jakob Hansen, Dorothea Mylopotamitaki, Gaudry Troché, Huan Xia, Jorsua Herrera Bethencourt, Karen Ruebens, Geoff M. Smith, Zandra Fagernäs, Frido WelkerUniversity of Copenhagen, Copenhagen, Denmark100 SPDThermo Orbitrap Exploris 480

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100-spdthermo-orbitrap-exploris-480The phosphatase inhibitor LB-100 creates neoantigens in colon cancer cells through perturbation of mRNA splicingPublication2024Matheus H Dias, Vladyslava Liudkovska, Jasmine Montenegro Navarro, Lisanne Giebel, Julien Champagne, Chrysa Papagianni, Onno B Bleijerveld, Arno Velds, Reuven Agami, René Bernards & Maciej CieślaDivision of Molecular Carcinogenesis and Oncode Institute, The Netherlands Cancer Institute, Amsterdam, The NetherlandsExtended methodThermo Orbitrap Exploris 480

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extended-methodthermo-orbitrap-exploris-480A promiscuous mechanism to phase separate eukaryotic carbon fixation in the green lineagePublication2024James Barrett, Mihris I.S. Naduthodi, Yuwei Mao, Clément Dégut, Sabina Musiał, Aidan Salter, Mark C. Leake, Michael J. Plevin, Alistair J. McCormick, James N. Blaza, Luke C.M. MackinderDepartment of Biology, University of York, York, UK60 SPDBruker timsTOF HT

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60-spdbruker-timstof-htCraspase Orthologs Cleave a Nonconserved Site in Target Protein Csx30Publication2024Sam P. B. van Beljouw, Anna C. Haagsma, Konstantinos Kalogeropoulos, Martin Pabst, Stan J. J. BrounsDepartment of Bionanoscience, Delft University of Technology, Delft, NetherlandsWhisper 20 SPDThermo Orbitrap Eclipse Tribid

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whisper-20spdthermo-orbitrap-exploris-480Craspase Orthologs Cleave a Nonconserved Site in Target Protein Csx30Publication2024Sam P. B. van Beljouw, Anna C. Haagsma, Konstantinos Kalogeropoulos, Martin Pabst, and Stan J. J. BrounsDepartment of Bionanoscience, Delft University of Technology, Delft, NetherlandsWhisper 20 SPDThermo Orbitrap Eclipse Tribid

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whisper-20spdthermo-orbitrap-eclipse-tribidGlobal organization of phenylpropanoid and anthocyanin pathways revealed by proximity labeling of trans-cinnamic acid 4-hydroxylase (CYP73A412) in Petunia inflata petal protoplastsPublication2024Javiera Aravena-Calvo, Silas Busck-Mellor, Tomas LaursenDepartment of Plant and Environmental Sciences (PLEN), Section for Plant Biochemistry, University of Copenhagen, Denmark30 SPDtimsTOF Pro 2

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30-spdtimstof-pro-2Lectin-Based Immunophenotyping and Whole Proteomic Profiling of CT-26 Colon Carcinoma Murine ModelPublication2024Anna Faragó, Ágnes Zvara, László Tiszlavicz, Éva Hunyadi-Gulyás, Zsuzsanna Darula, Zoltán Hegedűs, Enikő Szabó, Sára Eszter Surguta, József Tóvári, László G. Puskás, and Gábor J. SzebeniAstridbio Technologies Ltd., Wimmer Fülöp utca 1, Hungary15 SPDThermo Orbitrap Fusion Lumos

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30-spdbruker-timstof-flexExploring the role of production and release of proteins for microbial interactions in kombuchaPublication2024Jacqueline Rodriguez Rey, Thierry Tran, Amaury Aumeunier, Aurélie Rieu, François Verdier, Antoine Martin, Hervé Alexandre, Raphaëlle Tourdot-Maréchal, Cosette GrandvaletUMR PAM 1517, Université Bourgogne, Institut Agro, Dijon, France30 SPDtimsTOF Pro 2

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30-spdtimstof-pro-2Plasma complement and coagulation proteins as prognostic factors of negative symptoms: An analysis of the NAPLS 2 and 3 studiesPublication2024Jonah F. Byrne, Colm Healy, Melanie Föcking, Meike Heurich, Subash Raj Susai, David Mongan, Kieran Wynne, Eleftheria Kodosaki, Scott W. Woods, Barbara A. Cornblatt, William S. Stone, Daniel H. Mathalon, Carrie E. Bearden, Kristin S. Cadenhead, Jean AddingDepartment of Psychiatry, Royal College of Surgeons in Ireland, University of Medicine and Health Sciences, Dublin, IrelandtimsTOF Pro

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timstof-proExtracellular vesicles derived CXCL4 is a candidate serum tumor biomarker for colorectal cancerPublication2024Jinye Xie, Shan Xing, Hongbo Jiang, Jiaju Zhang, Daxiao Li, Shiqiong Niu, Zhijian Huang, and Haofan YinDepartment of Laboratory Medicine, Zhongshan City People’s Hospital, Zhongshan, Guangdong, China30 SPDBruker timsTOF Pro

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30-spdbruker-timstof-proER-export and ARFRP1/AP-1–dependent delivery of SARS-CoV-2 Envelope to lysosomes controls late stages of viral replicationPublication2024Guy J. Pearson, Harriet V. Mears, Malgorzata Broncel, Ambrosius P. Snijders, David L. V. Bauer, Jeremy G. CarltonOrganelle Dynamics Laboratory, The Francis Crick Institute, London, UKThermo Orbitrap Fusion Lumos

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thermo-orbitrap-fusion-lumosCheap, Robust and Versatile Two-Dimensional Chromatography system for Proteomics of Nanogram Scale SamplesPublication2024Eduardo S. Kitano, Gareth Nisbet, Yana Demyanenko, Katarzyna M Kowalczyk, Louisa Iselin, Stephen Cross, Alfredo Castello, Shabaz MohammedRosalind Franklin Institute, Harwell Campus, United Kingdom30 SPDThermo Orbitrap Ascend Tribid

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30-spdthermo-orbitrap-ascend-tribidMatrimeres are systemic nanoscale mediators of tissue integrity and functionPublication2024Koushik Debnath, Irfan Qayoom, Steven O’Donnell, Julia Ekiert, Can Wang, Mark A. Sanborn, Chang Liu, Ambar Rivera, Ik Sung Cho, Saiumamaheswari Saichellappa, Peter T. Toth, Dolly Mehta, Jalees Rehman, Xiaoping Du, Yu Gao, and Jae-Won ShinDepartment of Pharmacology and Regenerative Medicine, College of Medicine, Chicargo, IL, USA60 SPDThermo Q Exactive HF

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60-spdthermo-q-exactive-hfProbe-dependent Proximity Profiling (ProPPr) Uncovers Similarities and Differences in Phospho-Tau-Associated Proteomes Between TauopathiesPublication2024Dmytro Morderer, Melissa C. Wren, Feilin Liu, Naomi Kouri, Anastasiia Maistrenko, Bilal Khalil, Nora Pobitzer, Michelle Salemi, Brett S. Phinney, Dennis W. Dickson, Melissa E. Murray and Wilfried RossollDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA100 SPDtimsTOF Pro 2

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100-spdtimstof-pro-2Identification of Four Mouse FcRn Splice Variants and FcRn-Specific VesiclesPublication2024George Haddad, Judith BlaineDivision of Renal Disease and Hypertension, Department of Medicine, School of Medicine, University of Colorado, Aurora, USABruker timsTOF SCP

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bruker-timstof-scpDIP-MS: ultra-deep interaction proteomics for the deconvolution of protein complexesPublication2024Fabian Frommelt, Andrea Fossati, Federico Uliana, Fabian Wendt, Peng Xue, Moritz Heusel, Bernd Wollscheid, Ruedi Aebersold, Rodolfo Ciuffa & Matthias GstaigerDepartment of Biology, Institute of Molecular Systems Biology, Zurich, Switzerland60 SPDThermo Q-Exactive Plus Hybrid Quadrupole-Orbitrap

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60-spdthermo-q-exactive-plus-hybrid-quadrupole-orbitrapRNA damage compartmentalization by DHX9 stress granulesPublication2024Yilong Zhou, Amol Panhale, Maria Shvedunova, Mirela Balan, Alejandro Gomez-Auli, Herbert Holz, Janine Seyfferth, Martin Helmstädter, Séverine Kayser, Yuling Zhao, Niyazi Umut Erdogdu, Iga Grzadzielewska, Gerhard Mittler, Thomas Manke, and Asifa AkhtarMax Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany30 SPDThermo Orbitrap Exploris 480

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30-spdthermo-orbitrap-exploris-480NFATC2IP is a mediator of SUMO- dependent genome integrityPublication2024Tiffany Cho, Lisa Hoeg, Dheva Setiaputra, and Daniel DurocherLunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario, Canada60 SPDtimsTOF Pro 2

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60-spdtimstof-pro-2A Multiomics Assessment of Preoperative Exercise in Pancreatic Cancer Survivors Receiving Neoadjuvant Therapy: A Case SeriesPublication2024Travis Nemkov, Francesca Cendali, Monika Dzieciatkowska, Daniel Stephenson, Kirk C. Hansen, Catherine M. Jankowski, Angelo D’Alessandro and Ryan J. MarkerDepartment of Biochemistry and Molecular Genetics, Anschutz Medical Campus, University of Colorado, Aurora, USABruker timsTOF Pro

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bruker-timstof-proIntegrating multiplex-staining and multiplex-DIA: Profiling the tumor microenvironment spatial proteome for precision cancer researchPublication2024Xiang Zheng, Andreas Mund, Matthias MannUniversity of Copenhagen, Copenhagen, DenmarkBruker timsTOF SCP

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bruker-timstof-scpMolecular interactions of human receptor tyrosine kinase oncogenic fusionsPublication2024Giovanna Dashi, Markku VarjosaloUniversity of Helsinki, Helsinki, FinlandBruker timsTOF Pro

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bruker-timstof-proA T6SS in the coral pathogen Vibrio coralliilyticus secretes an arsenal of anti-eukaryotic effectors and contributes to virulencePublication2024Shir Mass, Hadar Cohen, Motti Gerlic, Blake Ushijima, Julia C. van Kessel, Eran Bosis, and Dor SalomonDepartment of Clinical Microbiology and Immunology, School of Medicine, Faculty of Medical and Health Sciences, Tel Aviv University, Israel15 SPDThermo Q Exactive HF

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15-spdthermo-q-exactive-hfProteomic study of left ventricle and cortex in rats after myocardial infarctionPublication2024Mengli Chang, Huanhuan Wang, Yuxin Lei, Hongjun Yang, Jing Xu & Shihuan TangInstitute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, ChinaThermo Q Exactive HF-X

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thermo-q-exactive-hf-xDeciphering molecular mechanisms of synergistic growth reduction in kinase inhibitor combinationsPublication2024Eirini Tsirvouli, Ana Martinez del Val, Liv Thommesen, Astrid Lægreid, Martin Kuiper, Jesper Olsen, Åsmund FlobakDepartment of Biology, Norwegian University of Science and Technology, Trondheim, Norway60 SPDThermo Orbitrap Exploris 480

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60-spdthermo-orbitrap-exploris-480Proteomic Analysis Reveals Trilaciclib-Induced SenescencePublication2024Marina Hermosilla-Trespaderne, Mark Xinchen Hu-Yang, Abeer Dannoura, Andrew M. Frey, Amy L. George, Matthias Trost, José Luis Marín-RubioBiosciences Institute, Newcastle University, Newcastle-upon-Tyne, UK100 SPDBruker timsTOF HT

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100-spdbruker-timstof-htWidespread S-persulfidation in activated macrophages as a protective mechanism against oxidative-inflammatory stressPublication2024Talal Salti, Ilana Braunstein, Yael Haimovich, Tamar Ziv, Moran BenharDepartment of Biochemistry, Rappaport Faculty of Medicine, Technion–Israel Institute of Technology, Haifa, Israel15 SPDThermo Q Exactive HF

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15-spdthermo-q-exactive-hfTheileria parasites sequester host eIF5A to escape elimination by host-mediated autophagyPublication2024Aristeidis Panagiotou, Aurélie Richard, Angélique Amo, Yulianna Koziy, Souhila Medjkane, Sergio Valente, Rossella Fioravanti, Catherine Pioche-Durieu, Laurent Lignière, Guillaume Chevreux, Antonello Mai & Jonathan B. WeitzmanUniversité Paris Cité, CNRS, UMR7126 Epigenetics and Cell Fate, Paris, France30 SPDThermo Orbitrap Fusion Lumos

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30-spdthermo-orbitrap-fusion-lumosHuman Dermal Decellularized ECM Hydrogels as Scaffolds for 3D In Vitro Skin aging ModelsPublication2024Estibaliz Fernandez‐Carro, Ana Rosa Remacha, Irene Orera, Giuseppe Lattanzio, Alberto Garcia‐Barrios, Jesús del Barrio, Clara Alcaine and Jesús CirizaTissue Microenvironment (TME) Lab. Aragón Institute of Engineering Research (I3A), University of Zaragoza, Zaragoza, Spain60 SPDBruker timsTOF fleX

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60-spdbruker-timstof-flexDirect Relationship between Protein Expression and Progeny Yield of Herpes Simplex Virus 1 Unveils a Rate-limiting Step for Virus ProductionPublication2024Moeka Nobe, Yuhei Maruzuru, Kosuke Takeshima, Fumio Maeda, Hideo Kusano, Raiki Yoshimura, Takara Nishiyama, Hyeongki Park, Yoshitaka Kozaki, Shingo Iwami, Naoto Koyanagi, Akihisa Kato1, Tohru Natsume, Shungo Adachi, and Yasushi KawaguchiDivision of Molecular Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo, Japan100 SPDThermo Q Exactive HF-X

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100-spdthermo-q-exactive-hf-xCharacterization of preovulatory follicular fluid secretome and its effects on equine oocytes during in vitro maturationPublication2024Javier G. Casado, Eva Pericuesta, Alfonso Gutiérrez-Adán, Esperanza González, Mikel Azkargorta, Ricardo Conde, Maider Bizkarguenaga, Nieves Embade, Félix Elortza, Juan M. Falcón-Pérez, Óscar Millet, Lauro González-Fernández, Beatriz Macías-GarcíaDepartamento de Medicina Animal, Facultad de Veterinaria, Grupo de Investigación Medicina Interna Veterinaria (MINVET), Instituto de Investigación INBIO G+C, Universidad de Extremadura, Cáceres, Spain30 SPDtimsTOF Pro

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30-spdtimstof-proPersonalized phosphoproteomics of skeletal muscle insulin resistance and exercise links MINDY1 to insulin actionPublication2024Johan D. Onslev, Alexis Diaz-Vegas, Magnus R. Leandersson, Jonas Møller Kristensen, Kohei Kido, Erik A. Richter, Kurt Højlund, Benjamin L. Parker, Kristen Cooke, Guang Yang, Christian Pehmøller, Sean J. Humphrey, David E. James, Jørgen F.P. WojtaszewskiCharles Perkins Centre, School of Life and Environmental Sciences, University of Sydney, New South Wales, Australia30 SPDThermo Orbitrap Exploris 480

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30-spdthermo-orbitrap-exploris-480Comprehensive proteomics of CSF, plasma, and urine identify DDC and other biomarkers of early Parkinson’s diseasePublication2024Sephira Ryman, Maya Yutsis, Gayle K. Deutsch, Elizabeth Mormino, Alexandra Trelle, Anthony D. Wagner, Geoffrey A. Kerchner, Lu Tian, Carlos Cruchaga, Victor W. Henderson, Thomas J. Montine, Per Borghammer, Tony Wyss-Coray & Kathleen L. PostonDepartment of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford University, Stanford, CA, USAtimsTOF Pro

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timstof-proAlphaPept: a modern and open framework for MS-based proteomicPublication2024Maximilian T. Strauss, Isabell Bludau, Wen-Feng Zeng, Eugenia Voytik, Constantin Ammar, Julia P. Schessner, Rajesh Ilango, Michelle Gill, Florian Meier, Sander Willems & Matthias MannDepartment of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany200 SPDtimsTOF Pro

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200-spdtimstof-proNeat plasma proteomics: getting the best out of the worstPublication2024Ines Metatla, Kevin Roger, Cerina Chhuon, Sara Ceccacci, Manuel Chapelle, Pierre-Olivier Schmit, Vadim Demichev & Ida Chiara GuerreraProteomics Platform Necker, Université Paris Cité-Structure Fédérative de Recherche Necker, Paris, France100 SPD, 60 SPD, Whisper 40 SPDtimsTOF Pro

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100-spd 60-spd whisper-40spdtimstof-proProteomic profiling of IDH-wildtype Glioblastoma Tissue and Serum uncovers prognostic Subtypes and Marker CandidatesPublication2024Tilman Werner, Agnes Schäfer, Michael Hennes, Miguel Cosenza Contreras, Guadalupe Espadas, Eduard Sabido, Lena Cook, Axel Pagenstecher, Niko Pinter, Tobias Feilen, Alexander Grote, Christopher Nimsky, Jörg Walter Bartsch, Oliver SchillingInstitute for Surgical Pathology, Faculty of Medicine, University Medical Center Freiburg30 SPDThermo Orbitrap Fusion Lumos

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30-spdthermo-orbitrap-fusion-lumosStructure and interactions of the endogenous human Commander complexPublication2024Saara Laulumaa, Esa-Pekka Kumpula, Juha T. Huiskonen & Markku VarjosaloInstitute of Biotechnology, Helsinki Institute of Life Science HiLIFE, University of Helsinki, Finland60 SPDtimsTOF Pro

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60-spdtimstof-proUniversal pretreatment development for low-input proteomics using lauryl maltose neopentyl glycolJournal article2024Ryo Konno, Masaki Ishikawa, Daisuke Nakajima, Yusuke Endo, Osamu Ohara, Yusuke KawashimaDepartment of Applied Genomics, Kazusa DNA Research Institute, Kisarazu, JapanWhisper 80 SPDThermo Orbitrap Exploris 480

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whisper-80-spdthermo-orbitrap-exploris-480Phosphoproteomic Analysis and Organotypic Cultures for the Study of Signaling PathwaysPublication2024Zilu Ye, Hans H. Wandall, and Sally DabelsteenCopenhagen Center for Glycomics, Departments of Cellular and Molecular Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, DenmarkThermo Orbitrap Exploris 480

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thermo-orbitrap-exploris-480TIMAHAC: Streamlined Tandem IMAC-HILIC Workflow for Simultaneous and High-Throughput Plant Phosphoproteomics and N-glycoproteomicsPublication2024Chin-Wen Chen, Pei-Yi Lin, Ying-Mi Lai, Miao-Hsia Lin, Shu-Yu Lin, ChuanChih HsuInstitution of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan30 SPDBruker timsTOF HT

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30-spdbruker-timstof-htPolydopamine nanoparticles as a non-pharmaceutical tool in the treatment of fatty liver diseasePublication2024Alessio Carmignani, Matteo Battaglini, Martina Bartolucci, Andrea Petretto, Mirko Prato, Gianni CiofaniIstituto Italiano di Tecnologia, Smart Bio-Interfaces, Pontedera, Italy30 SPDThermo Orbitrap Exploris 480

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30-spdthermo-orbitrap-exploris-480diaPASEF Enables High-throughput Proteomic Analysis of Host Cell Proteins for Biopharmaceutical Process DevelopmentPublication2024Taku Tsukidate, Alyssa Q. Stiving, Shannon Rivera, Ansuman Sahoo, Sri Madabhushi, Xuanwen LiAnalytical Research & Development Mass Spectrometry, New Jersey, United States100 SPD, 15 SPD, 30 SPDtimsTOF Pro 2

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100-spd 15-spd 30-spdtimstof-pro-2SARS-CoV-2 Infection and Anemia—A Focus on RBC Deformability and Membrane Proteomics—Integrated Observational Prospective StudyPublication2024Angelo D’Alessandro, Elena Krisnevskaya, Valentina Leguizamon,Ines Hernández, Carolina de la Torre, Joan-Josep Bech, Josep-Tomàs Navarro and Joan-Lluis Vives-CorronsMedical Campus, University of Colorado Anschutz, Aurora, USAThermo Orbitrap Eclipse Tribid

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thermo-orbitrap-eclipse-tribidThe UFM1 E3 ligase recognizes and releases 60S ribosomes from ER transloconsPublication2024Linda Makhlouf, Joshua J. Peter, Helge M. Magnussen, Rohan Thakur, David Millrine, Thomas C. Minshull, Grace Harrison, Joby Varghese, Frederic Lamoliatte, Martina Foglizzo, Thomas Macartney, Antonio N. Calabrese, Elton Zeqiraj & Yogesh KulathuMRC Protein Phosphorylation and Ubiquitylation Unit, University of Dundee, UK30 SPDThermo Orbitrap Eclipse Tribid

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30-spdthermo-orbitrap-eclipse-tribidAutomated high-throughput biological sex identification from archaeological human dental enamel using targeted proteomicsPublication2024Palesa P. Madupe, Gaudry B. Troché, Nuno Vibe Hermann, Marina Martínez de Pinillos, María MartinónTorres, Sandra Mularczyk, Marie Louise Schjellerup Jørkov, Christopher Gerner,Fabian Kanz, Ana Martinez-Val1, Enrico Cappellini, Jesper V. OlsenNovo Nordisk Foundation Center for Protein Research, Proteomics Program, Faculty ofHealth and Medical Sciences, University of Copenhagen, Denmark.200 SPD, 30 SPDThermo Orbitrap Exploris 480

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200-spd 30-spdthermo-orbitrap-exploris-480The Proteome of Extracellular Vesicles Released from Pulmonary Microvascular Endothelium Reveals Impact of Oxygen Conditions on BiotraumaPublication2024Wolfgang Schaubmayr, Beatrix Hochreiter, Eva Hunyadi-Gulyas, Louise Riegler, Katy Schmidt, Akos Tiboldi, Bernhard Moses, Klaus U. Klein, Katharina Krenn, Gisela Scharbert, Thomas Mohr, Johannes A. Schmid, Andreas Spittler,and Verena TretterDepartment of Anesthesia, General Intensive Care and Pain Medicine, Medical University of Vienna, Austria15 SPDThermo Orbitrap Fusion Lumos

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15-spdthermo-orbitrap-fusion-lumosPU.1 Eviction at Lymphocyte-Specific Chromatin Domains Mediates Glucocorticoid Response in Acute Lymphoblastic LeukemiaPublication2024Yizhou Huang, Han Zhao, Xiaolu Tai, Wenqian Xu, Hansen Kosasih, David Kealy, Katherine Bridge, Weiye Zhao, Andrew Holding, Adam Dowle, Samuel Taylor, Gaoxian Song, Diego Fajardo, Yashna Walia, Meng Wang, Chao Zhang, Jin Wang, Jian-Qing MiState Key Laboratory of Medical Genomics, Shanghai Institute of Hematology, Rui Jin Hospital Affiliated to Shanghai Jiao Tong University (SJTU) School of Medicine, Shanghai100 SPDBruker timsTOF HT

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100-spdbruker-timstof-htTargeting cancer-derived extracellular vesicles by combining CD147 inhibition with tissue factor pathway inhibitor for the management of urothelial cancer cellsPublication2024Vijay Kumar Boddu, Piet Zamzow, Mario Wolfgang Kramer, Axel S. Merseburger, Sivahari Prasad Gorantla, Matthias Klinger, Lena Cramer, Thorben Sauer, Timo Gemoll, Nikolas von Bubnoff, Frank Gieseler & Masoud DarabiDepartment of Hematology and Oncology, Section for Experimental Oncology, University Hospital Schleswig-Holstein, Lübeck, Germany15 SPD, Extended method

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15-spd extended-methodComparative proteomic analysis of the changes in mare milk associated with different lactation stages and management systemsPublication2024Ana Blanco-Doval, Mikel Azkargorta, Ibon Iloro, Jabier Beaskoetxea, Felix Elortza, Luis Javier R. Barron, Noelia AldaiLactiker Research Group, Department of Pharmacy and Food Sciences, University of the Basque Country (UPV/EHU), Vitoria-Gasteiz, Spain30 SPDtimsTOF Pro

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30-spdtimstof-proDYRKP kinase regulates cell wall degradation in Chlamydomonas by inducing matrix metalloproteinase expressionPublication2024Minjae Kim, Gabriel Lemes Jorge, Moritz Aschern, Stéphan Cuiné, Marie Bertrand,Malika Mekhalfi, Jae-Seong Yang, Jay J. Thelen, Fred Beisson, Gilles Peltier, and Yonghua Li-BeissonCEA, CNRS, Aix-Marseille University, Institute of Biosciences and Biotechnologies of Aix9 Marseille (BIAM),Saint-Paul-lez-Durance, FrancetimsTOF Pro 2

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timstof-pro-2Personalized Molecular Signatures of Insulin Resistance and Type 2 DiabetesPublication2024Jeppe Kjærgaard Larsen, Ben Stocks, John Henderson, Daniel Andersson, Jesper Bäckdah, Daniel Eriksson-Hogling, Jacob V. Stidsen, Kei Sakamoto, Kurt Højlund, Mikael Rydén, Juleen R. Zierath, Anna Krook, Atul S. DeshmukhNovo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark30 SPDtimsTOF Pro 2

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30-spdtimstof-pro-2STREAMLINED PROTEOME-WIDE IDENTIFICATION OF DRUG TARGETS INDICATES ORGAN-SPECIFIC ENGAGEMENTPublication2024Tanveer Singh Batth, Marie Locard-Paulet, Nadezhda T. Doncheva, Blanca Lopez Mendez, Lars Juhl Jensen, and Jesper Velgaard OlsenNovo Nordisk Foundation Center for Protein Research, University of Copenhagen, Copenhagen, Denmark30 SPDThermo Orbitrap Exploris 480

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30-spdthermo-orbitrap-exploris-480Phosphoproteomic investigation of targets of protein phosphatases in EGFR signalingPublication2024Akihiro Eguchi, Jesper V. OlsenNovo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark60 SPDThermo Orbitrap Exploris 480

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60-spdthermo-orbitrap-exploris-480Fragment ion intensity prediction improves the identification rate of non-tryptic peptides in timsTOFPublication2024Charlotte Adams, Wassim Gabriel, Kris Laukens, Mario Picciani, Mathias Wilhelm, Wout Bittremieux, Kurt BoonenDepartment of Computer Science, University of Antwerp, Antwerp, Belgium100 SPDtimsTOF Pro

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100-spdtimstof-proProximity labeling proteomics reveals Kv1.3 potassium channel immune interactors in microgliaPublication2024Christine A. Bowen, Hai M. Nguyen, Young Lin, Pritha Bagchi, Aditya Natu, Claudia Espinosa-Garcia, Erica Werner, Prateek Kumar, Brendan R. Tobin, Levi Wood, Victor Faundez, Heike Wulff, Nicholas T. Seyfried, Srikant RangarajuCenter for Neurodegenerative Diseases, Emory University, Atlanta, GA, USA15 SPD, 30 SPDThermo Q-Exactive Plus Hybrid Quadrupole-Orbitrap

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15-spd 30-spdthermo-q-exactive-plus-hybrid-quadrupole-orbitrapUltra-fast label-free quantification and comprehensive proteome coverage with narrow-window data-independent acquisitionPublication2024Amelia C. Peterson, Florian Harking, Ole Østergaard, Rasmus Rydbirk, Susana Aznar, Hamish Stewart, Yue Xuan, Daniel Hermanson, Stevan Horning, Christian Hock, Alexander Makarov, Vlad Zabrouskov & Jesper V. OlsenNovo Nordisk Foundation Center for Protein Research, University of Copenhagen, Copenhagen, Denmark30 SPDThermo Orbitrap Astral, Thermo Orbitrap Exploris 480

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30-spdthermo-orbitrap-astral thermo-orbitrap-exploris-480Refining Spatial Proteomics by Mass Spectrometry: An Efficient Workflow Tailored for Archival TissuePublication2024Rune Daucke, Charlotte V. Rift, Nicolai S. Bager, Kartikey Saxena, Peter R. Koffeldt, Jakob Woessmann, Valdemaras Petrosius, Eric Santoni-Rugiu, Bjarne W. kristensen, Pia Klausen & Erwin M. SchoofDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Lyngby, DenmarkWhisper 20 SPDThermo Orbitrap Eclipse Tribid

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whisper-20spdthermo-orbitrap-eclipse-tribidHomo sapiens reached the higher latitudes of Europe by 45,000 years agoPublication2024Michael Hein, Sahra Talamo, Lukas Wacker, Harald Meller, Holger Dietl, Jörg Orschiedt, Jesper V. Olsen, Hugo Zeberg, Kay Prüfer, Johannes Krause, Matthias Meyer, Frido Welker, Shannon P. McPherron, Tim Schüler & Jean-Jacques HublinMax Planck Institute for Evolutionary Anthropology, Leipzig, Germany200 SPDThermo Orbitrap Exploris 480

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200-spdthermo-orbitrap-exploris-480The Gárdos Channel and Piezo1 Revisited: Comparison between Reticulocytes and Mature Red Blood CellsPublication2024Min Qiao, Carmen Van der Zwaan, Maria Giustina Rotordam,Thomas John, Laura Hertz, Arjan J. Hoogendijk, Nadine Becker, Christian Wagner, Marieke Von Lindern, Stephane Egee, Emile Van den Akker and Lars KaestnerTheoretical Medicine and Biosciences, Campus University Hospital, Saarland University, Homburg, Germany30 SPDBruker timsTOF HT

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30-spdbruker-timstof-htActivity-Guided Proteomic Profiling of Proteasomes Uncovers a Variety of Active (And Inactive) Proteasome SpeciesPublication2024Manisha Priyadarsini Sahoo, Tali Lavy, Noam Cohen, Indrajit Sahu & Oded KleifeldFaculty of Biology, Technion-Israel Institute of Technology, Technion City, Haifa, IsraelThermo Orbitrap Exploris 480, Thermo Q Exactive HF

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thermo-orbitrap-exploris-480 thermo-q-exactive-hfThe loss of the PDIM/PGL virulence lipids causes differential secretion of ESX-1 sub-strates in Mycobacterium marinumPublication2024Bradley S. Jones, Daniel D. Hu, Kathleen R. Nicholson, Rachel M. Cronin, Matthew M. Champion and Patricia A. ChampionDepartment of Biological Sciences, Eck Institute for Global Health, Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana, United States15 SPDtimsTOF Pro

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15-spdtimstof-proImplementation of pupylation-based proximity labelling in plant biology reveals regulatory factors in cellulose biosynthesisPublication2024Shuai Zheng, Ouda Khammy, Lise Charlotte Marie Noack, Andreas De Meyer, Ghazanfar Abbas Khan, Nancy De Winne, Dominique Eeckhout, Daniel van Damme, Staffan PerssonCopenhagen Plant Science Center, Department of Plant & Environmental Sciences, University of Copenhagen, Frederiksberg C, Denmark30 SPDtimsTOF Pro

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30-spdtimstof-proA macroevolution-inspired approach to reveal novel antibiotic resistance mechanismsPublication2024Luiz Pedro de Carvalho, Fernanda Subtil, Teresa Machado, Holly Douglas, Joanna Kirkpatrick, Mark Skehel & Acely Garza-GarciaThe Herbert Wertheim UF Scripps Institute, FL, United StatesThermo Orbitrap Fusion Lumos

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thermo-orbitrap-fusion-lumosDifferential expression of haptoglobin in individuals at clinical high risk of psychosis and its association with global functioning and clinical symptomsPublication2024Kieran Wynne, Carrie E. Bearden, Scott W. Woods, Barbara Cornblatt, Daniel Mathalon, William Stone, Tyrone D. Cannon, Jean Addington, Kristin S. Cadenhead, Diana Perkins, Clark Jeffries, David CotterDepartment of Psychiatry, Royal College of Surgeons in Ireland, Dublin, IrelandtimsTOF Pro

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timstof-proIncreased Cholesterol Synthesis Drives Neurotoxicity in Patient Stem Cell-Derived Model of Multiple SclerosisPublication2024Cory M. Willis, Luca Peruzzotti-Jametti, Valentina Fossati, Frank Edenhofer, Tommaso Leonardi, Christian Frezza, Irina Mohorianu, Angelo D’Alessandro, and Stefano PluchinoDepartment of Clinical Neurosciences and NIHR Biomedical Research Centre, University of Cambridge, Cambridge, UKtimsTOF Pro

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timstof-proProteomic Biomarkers for the Prediction of Transition to Psychosis in Individuals at Clinical High Risk: A Multi-cohort Model Development StudyPublication2024Carrie E Bearden, Kristin S Cadenhead, Jean Addington, Elaine F Walker, Tyrone D Cannon, Mary Cannon, Pat McGorry, Paul Amminger, Gerard Cagney, Barnaby Nelson, Clark Jeffries, Diana Perkins, David R CotterDepartment of Psychiatry, Royal College of Surgeons in Ireland, University of Medicine and Health Sciences, Dublin, IrelandtimsTOF Pro

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timstof-proPlasma Proteomic Analysis Based on 4D-DIA Evaluates the Clinical Response to Imrecoxib in the Early Treatment of OsteoarthritisPublication2024López-Gómez J, Villareal L, Andrés M, Ponte I, Xicoy B, Zamora L, Vilaseca M, Roque ABiochemistry and Molecular Biology Department, Biosciences Faculty. Universitat Autònoma de Barcelona, Spain15 SPDThermo Orbitrap Eclipse Tribid, Thermo Orbitrap Lumos

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15-spdthermo-orbitrap-eclipse-tribid thermo-orbitrap-lumosMechanism of chaperone coordination during cotranslational protein folding in bacteriaPublication2024Alžběta Roeselová, Sarah L. Maslen, Santosh Shivakumaraswamy, Grant A. Pellowe, Steven Howell, Dhira Joshi, Joanna Redmond, Svend Kjaer, J. Mark Skehel and David BalchinProtein Biogenesis Laboratory, The Francis Crick Institute, London, UK30 SPDThermo Orbitrap Fusion Lumos

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30-spdthermo-orbitrap-fusion-lumosThe Molecular Twin artificial-intelligence platform integrates multi-omic data to predict outcomes for pancreatic adenocarcinoma patientsPublication2024Pranav Singh, Darya Filippova, Grant Dagliyan, Cristina R. Ferrone, Lei Zheng, Jason H. Moore, Warren Tourtellotte, Jennifer E. Van Eyk & Dan TheodorescuSamuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USAThermo Orbitrap Exploris 480

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thermo-orbitrap-exploris-480Automated single-cell proteomics providing sufficient proteome depth to study complex biology beyond cell type classificationsPublication2024Claudia Ctortecka, Natalie M. Clark, Brian Boyle, Anjali Seth, D. R. Mani, Namrata D. Udeshi & Steven A. CarrBroad Institute of MIT and Harvard, Cambridge, MA, USAWhisper 40 SPDBruker timsTOF SCP

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whisper-40spdbruker-timstof-scpThe CDK Pho85 inhibits Whi7 Start repressor to promote cell cycle entry in budding yeastPublication2024Cristina Ros-Carrero, Mihai Spiridon-Bodi, J Carlos Igual and Mercè Gomar-AlbaInstitut de Biotecnologia i Biomedicina (BIOTECMED) and Departament de Bioquímica i Biologia Molecula rUniversitat de València, Burjassot SpainBruker timsTOF fleX

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bruker-timstof-flexCharacterization of MdpS: an in-depth analysis of a MUC5B-degrading protease from Streptococcus oralisPublication2024Fredrik Leo, Rolf Lood, Kristina A. Thomsson, Jonas Nilsson, Gunnel Svensäter, Claes WickströmDepartment of Oral Biology and Pathology, Faculty of Odontology, Malmö University, Malmö, SwedenWhisper 20 SPDThermo Q Exactive HF-X

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whisper-20spdthermo-q-exactive-hf-xThe loss of the PDIM/PGL virulence lipids causes differential secretion of ESX-1 substrates in Mycobacterium marinumPublication2024Bradley S. Jones, Daniel D. Hu, Kathleen R. Nicholson, Rachel M. Cronin, Matthew M. Champion, and Patricia A. ChampionDepartment of Biological Sciences, Eck Institute for Global Health, Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana15 SPDtimsTOF Pro

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15-spdtimstof-proProteomics of colorectal tumors identifies the role of CAVIN1 in tumor formation and progressionPublication2024Jesper Olsen, Ana Martinez-Val, Leander van der Hoeven, Dorte Bekker-Jensen, Margarita Jørgensen, Jesper Nors, Giulia Franciosa, Claus Andersen, Jesper BramsenNovo Nordisk Foundation Center for Protein Research, University of Copenhagen, Copenhagen, Denmark60 SPDThermo Orbitrap Exploris 480

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60-spdthermo-orbitrap-exploris-480timsTOF HT Improves Protein Identification and Quantitative Reproducibility for Deep Unbiased Plasma Protein Biomarker DiscoveryPublication2024Chinmay Belthangady, John Blume, Jessica K. Chan, Guillermo Flores-Campuzano, Yuntao Hu, Manway Liu, Mark A. Marispini, Megan G. Mora, Saividya Ramaswamy, Purva Ranjan, Preston B. Williams, Robert J. X. Zawada, Philip Ma, and Bruce E. WilcoxPrognomiQ Inc., San Mateo, California, United States100 SPD, 30 SPD, 60 SPDBruker timsTOF HT, timsTOF Pro 2

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100-spd 30-spd 60-spdbruker-timstof-ht timstof-pro-2Kinase inhibitor pulldown assay (KiP) for clinical proteomicsPublication2024Lester and Sue Smith Breast Center and Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USALester and Sue Smith Breast Center and Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA30 SPDThermo Orbitrap Exploris 480

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30-spdthermo-orbitrap-exploris-480Cerebrospinal fluid shotgun proteomics identifies distinct proteomic patterns in cerebral amyloid angiopathy rodent models and human patientsPublication2024Marc Vervuurt, Joseph M. Schrader, Anna M. de Kort, Iris Kersten, Hans J. C. T. Wessels, Catharina J. M. Klijn, Floris H. B. M. Schreuder, H. Bea Kuiperij, Jolein Gloerich, William E. Van Nostrand & Marcel M. VerbeekDepartment of Neurology, Donders Institute for Brain, Cognition and Behaviour, 830 TML, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands30 SPDtimsTOF Pro 2

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30-spdtimstof-pro-2Full Mass Range ΦSDM Orbitrap Mass Spectrometry for DIA Proteome AnalysisPublication2024Sophia Steigerwald, Ankit Sinha, Kyle L. Fort, Wen-Feng Zeng, Lili Niu, Christoph Wichmann, Arne Kreutzmann, Daniel Mourad, Konstantin Aizikov, Dmitry Grinfeld, Alexander Makarov, Matthias Mann, Florian MeierDepartment Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany100 SPD, 200 SPD, 60 SPDThermo Orbitrap Exploris 480

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100-spd 200-spd 60-spdthermo-orbitrap-exploris-480Multi-omics profiling with untargeted proteomics for blood-based early detection of lung cancerPublication2024Madhuvanthi Ramaiah, Saividya Ramaswamy, Purva Ranjan, Guanhua Shu, Peter Spiro, Benjamin Ta, Dijana Vitko, Jacob Waiss, Zachary Yanagihara, Robert Zawada, Jimmy Yi Zeng, Susan Zhang, James Yee, John E. Blume, Chinmay Belthangady, Bruce Wilcox, Philip MaPrognomiQ, Inc., San Mateo, CA, USA60 SPDBruker timsTOF HT

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60-spdbruker-timstof-htNext-Generation Proteomics of Brain Extracellular Vesicles in Schizophrenia Provide New Clues on the Altered Molecular ConnectomePublication2024Cristina Lorca, María Fernández-Rhodes, Jose Antonio Sánchez Milán, María Mulet, Félix Elortza, Alfredo Ramos-Miguel, Luis F. Callado, J. Javier Meana, Maria Mur, Iolanda Batalla, Elisabet Vilella, Aida Serra and Xavier Gallart-PalauBiomedical Research Institute of Lleida Dr. Pifarré Foundation (IRBLLEIDA), Neuroscience Area, +Pec Proteomics Research Group (+PPRG), University Hospital Arnau de Vilanova,Lleida, Spain15 SPDtimsTOF Pro

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15-spdtimstof-proLocalization, traffic and function of Rab34 in adipocyte lipid and endocrine functionsPublication2024Andrés Trávez, Carmen Tercero-Alcázar, Alejandro Correa-Sáez, María Jesús González-Rellán, Oriol A. Rangel-Zúñiga, Amaia Rodríguez, Antonio Membrives, Gema Frühbeck, Rubén Nogueiras, Marco A. Calzado, Rocío Guzmán-Ruiz & María M. MalagónDepartment of Cell Biology, Physiology, and Immunology, Maimonides Institute for Biomedical Research of Córdoba (IMIBIC), University of Córdoba (UCO), Reina Sofía University Hospital (HURS), Córdoba, SpainBruker timsTOF fleX

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bruker-timstof-flexFOXO1-mediated lipid metabolism maintains mammalian embryos in dormancyPublication2024Vera A. van der Weijden, Maximilian Stötzel, Dhanur P. Iyer, Beatrix Fauler, Elzbieta Gralinska, Mohammed Shahraz, David Meierhofer, Martin Vingron, Steffen Rulands, Theodore Alexandrov, Thorsten Mielke & Aydan Bulut-KarsliogluStem Cell Chromatin Group, Department of Genome Regulation, Max Planck Institute for Molecular Genetics, Berlin, GermanyWhisper 40 SPDThermo Q Exactive HF

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whisper-40spdthermo-q-exactive-hfDirect translation of incoming retroviral genomesPublication2024Julia Köppke, Luise-Elektra Keller, Michelle Stuck, Nicolas D. Arnow, Norbert Bannert, Joerg Doellinger & Oya CingözRobert Koch Institute, Department of Infectious Diseases, Unit of Sexually Transmitted Bacterial Pathogens and HIV, Berlin, Germany30 SPDBruker timsTOF HT

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30-spdbruker-timstof-htSingle cell proteomics by mass spectrometry reveals deep epigenetic insight and new targets of a class specific histone deacetylase inhibitorPublication2024Benjamin C. OrsburnThe Department of Pharmacology and Molecular Sciences, the Johns Hopkins University School of Medicine, Baltimore, MD, USA100 SPD, 200 SPD, 30 SPD, 300 SPD, 500 SPD, 60 SPDBruker timsTOF SCP

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100-spd 200-spd 30-spd 300-spd 500-spd 60-spdbruker-timstof-scpCalcium carbonate polymorph selection in fish otoliths: A key role of phosphorylation of Starmaker-like proteinPublication2024Marta Kalka, Klaudia Bielak, Maciej Ptak, Jarosław Stolarski, Piotr Dobryszycki, Magdalena WojtasWroclaw University of Science and Technology, Faculty of Chemistry, Department of Biochemistry, Molecular Biology and Biotechnology, Wrocław, PolandThermo Orbitrap Exploris 480

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thermo-orbitrap-exploris-480Trauma Induces Intravascular Hemolysis, Exacerbated by RBC Transfusion and Associated with Disrupted Arginine-Nitric Oxide MetabolismPublication2024Ernest E. Moore, Angela Sauaia, Monika Dzieciatkowska, William Hallas, Otto Thielen, Margot DeBot, Alexis Cralley, Ian LaCroix, Christopher Erickson, Sanchayita Mitra, Anirban Banerjee, Kenneth Jones, and Kirk C. HansenUniversity of Colorado Denver, School of Medicine, Department of Biochemistry and Molecular Genetics, Aurora, COtimsTOF Pro

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