# STOCKHOLM 1.0
#=GF ID snoZ105
#=GF AC RF00145
#=GF DE Small nucleolar RNA Z105
#=GF AU Wilkinson AC; 0000-0001-7406-0151
#=GF GA 45.0
#=GF NC 44.9
#=GF TC 45.0
#=GF PI snoR7
#=GF SE Predicted; CMfinder
#=GF SS Predicted; CMfinder
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 32.34 -Z 2958934 CM SEQDB
#=GF DR URL; http://bioinf.scri.sari.ac.uk/cgi-bin/plant_snorna/home;
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF RN [1]
#=GF RM 12736310
#=GF RT The high diversity of snoRNAs in plants: identification and comparative
#=GF RT study of 120 snoRNA genes from Oryza sativa.
#=GF RA Chen CL, Liang D, Zhou H, Zhuo M, Chen YQ, Qu LH
#=GF RL Nucleic Acids Res 2003;31:2601-2613.
#=GF RN [2]
#=GF RM 12007400
#=GF RT Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse
#=GF RT cellular functions.
#=GF RA Kiss T
#=GF RL Cell 2002;109:145-148.
#=GF CC This family consists of several snoRNA Z105 sequences which are members of
#=GF CC the C/D class of snoRNA which contain the C (UGAUGA) and D (CUGA) box
#=GF CC motifs. This family seems to be found exclusively in plants. C/D box small
#=GF CC nucleolar RNAs are known to act as a methylation guides for 18S ribosomal
#=GF CC RNA [1].
#=GF WK Small_nucleolar_RNA_Z105
#=GF SQ 11

AAAA02011125.1/45898-45831 UUGGCAUGAUGAGGAA----ACCUUACGUUUAU--CUGAUCUAUUUGAUGAUA--AAUU-CCUCCUACUCAUUCUGA
AJ489950.1/1-67            UUGGCAUGAUGAGGAA----AACCGAUGUUUUUG---GAUCUAUUUGAUGAUA--AAUU-CCUCCUACUCAUUCUGA
AC189189.1/52925-52858     AAGGCAUGAUGAGGAU-----UGUUU-AUUGUCAUCUGAUUUUC-UGA--UGAAUCAAUACCUCCUACUCAUUCUGA
AL049862.1/41945-41876     AAGGCAUGAUGAGGAU-----UGUUUUAUUGUCAUCUGAUUCUCAUGA--UGAAUAUAUACCUCCUACUCAUUCUGA
AARH01002622.1/16153-16085 AGGCAAUAAUGAUGAA-----AGAUUUAA-AUUAUCUUAUAUGUAUGA--UGAUUCAACACCUCCUACUCAUUCUGA
AC193778.1/40019-39952     GCAUAAUGAUGAUGCA---------AAAUUUGUUCCGAUUAUUCAUGAAUGGAAUACCAACCUCCUACUCAUUCUGA
AP006540.1/42483-42559     CUGGCAUGAUGAUGAUAAUUACGAUUGAUUUUGUAUGAUUAUUCAUAUGAUUAAUACAAUCCUCCUACUCAUUCUGA
AASG02002047.1/5497-5426   GCAUAGUGAUGAUGAA-----CUUGAAAUUUCCCGAUGAUUUUCAUGACAGGAAUAACAACCUCCUACUCAUACUGA
ABCN01006793.1/11445-11379 -UGGCU--AUGAGGAA-------ACACCUGUCUGAUCAUUUGAACUGAUGAGACCAAUCACCUCCUACUCAUUCUGA
FN596742.1/723319-723247   UUGGUAUGAUGAUGAAC---AUAACA-AUUAUUUUCUGAUGAUUCUUGAUUGAAUAAUAACCUCCUACUCAUUCUGA
AP003829.2/81303-81234     UUGGCAUGAUGAGGAA----AUCAAUCGUUUCUAACUGAUCCACUGGAUGAGA--AAUU-CCUCCUACUCAUUCUGA
#=GC SS_cons               :::::<<<<-------.....----------<<--<__________>---->>--------------->>>>:::::
#=GC RF                    uuGGcAUGAUGAuGAA.....ugauauAUUUucaucUgAUuUucaUgAugugaAUAAuuACCUCCUACUCAUUCUGA
//