text:
# Pattern directory
This is a listing of all the patterns hosted as part of this directory

## Patterns in dosdp-patterns
### Abnormal anatomical entity
*Any unspecified abnormality of an anatomical entity.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns/abnormalAnatomicalEntity.yaml |
| Name | abnormalAnatomicalEntity |
| Classes | PATO:0000001, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormalAnatomicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormalAnatomicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormalAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalAnatomicalEntity.tsv) |

### Abnormal level of chemical entity
*An abnormal amount of a chemical or protein. For example, MP_0011230 'abnormal folic acid level or HP:0012146 Abnormality of von Willebrand factor.'*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns/abnormalLevelOfChemicalEntity.yaml |
| Name | abnormalLevelOfChemicalEntity |
| Classes | PATO:0000070, PATO:0000460, CHEBI:24431,  |
| Variables | chemical entity (CHEBI:24431),  |
| Contributors | [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalLevelOfChemicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalLevelOfChemicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalLevelOfChemicalEntity.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormalLevelOfChemicalEntity.tsv) [mgpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mgpo/abnormalLevelOfChemicalEntity.tsv) |

### Abnormal level of chemical entity in location
*An abnormal level of a chemical in an anatomical entity, such as abnormal level of sodium in the blood.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns/abnormalLevelOfChemicalEntityInLocation.yaml |
| Name | abnormalLevelOfChemicalEntityInLocation |
| Classes | PATO:0000070, PATO:0000460, CHEBI:24431, BFO:0000004,  |
| Variables | chemical entity (CHEBI:24431), independent continuant (BFO:0000004),  |
| Contributors | [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalLevelOfChemicalEntityInLocation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalLevelOfChemicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalLevelOfChemicalEntityInLocation.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormalLevelOfChemicalEntityInLocation.tsv) |

## Patterns in dosdp-dev
### Abnormal absence of anatomical entity
**

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalAbsenceOfAnatomicalEntity.yaml |
| Name | abnormalAbsenceOfAnatomicalEntity |
| Classes | PATO:0000462, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalAbsenceOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalAbsenceOfAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalAbsenceOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormalAbsenceOfAnatomicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormalAbsenceOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalAbsenceOfAnatomicalEntity.tsv) |

### Abnormal absence of anatomical entity due to degeneration
*The complete loss of an antomical entity due to degeneration.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalAbsenceOfAnatomicalEntityDueToDegeneration.yaml |
| Name | abnormalAbsenceOfAnatomicalEntityDueToDegeneration |
| Classes | PATO:0015001, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormalAbsenceOfAnatomicalEntityDueToDegeneration.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalAbsenceOfAnatomicalEntityDueToDegeneration.tsv) |

### Abnormal absence of anatomical entity in location
*Absence of an anatomical entity in a location, such as absent aortic valve in the heart.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalAbsenceOfAnatomicalEntityInLocation.yaml |
| Name | abnormalAbsenceOfAnatomicalEntityInLocation |
| Classes | PATO:0000462, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalAbsenceOfAnatomicalEntityInLocation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalAbsenceOfAnatomicalEntityInLocation.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormalAbsenceOfAnatomicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalAbsenceOfAnatomicalEntityInLocation.tsv) |

### Abnormal absence of behavior
*A behavior that normally would occur does not occur.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalAbsenceOfBehavior.yaml |
| Name | abnormalAbsenceOfBehavior |
| Classes | PATO:0000462, PATO:0000460, NBO:0000313,  |
| Variables | behavior process (NBO:0000313),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-1373-1705](https://orcid.org/0000-0002-1373-1705),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalAbsenceOfBehavior.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalAbsenceOfBehavior.tsv) |

### Abnormal absence of biological process
**

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalAbsenceOfBiologicalProcess.yaml |
| Name | abnormalAbsenceOfBiologicalProcess |
| Classes | PATO:0000462, PATO:0000460, GO:0008150,  |
| Variables | biological process (GO:0008150),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalAbsenceOfBiologicalProcess.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalAbsenceOfBiologicalProcess.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalAbsenceOfBiologicalProcess.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormalAbsenceOfBiologicalProcess.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormalAbsenceOfBiologicalProcess.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalAbsenceOfBiologicalProcess.tsv) [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormalAbsenceOfBiologicalProcess.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormalAbsenceOfBiologicalProcess.tsv) |

### Abnormal absence of biological process in location
*A biological process that normally occurs does not occur in an anatomical entity/location.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalAbsenceOfBiologicalProcessInLocation.yaml |
| Name | abnormalAbsenceOfBiologicalProcessInLocation |
| Classes | PATO:0000462, PATO:0000460, GO:0008150, BFO:0000004,  |
| Variables | biological process (GO:0008150), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalAbsenceOfBiologicalProcessInLocation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalAbsenceOfBiologicalProcessInLocation.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormalAbsenceOfBiologicalProcessInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalAbsenceOfBiologicalProcessInLocation.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormalAbsenceOfBiologicalProcessInLocation.tsv) |

### Abnormal absence of chemical entity
*A chemical (entity) or protein such as sodium or insulin that are normally present is absent.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalAbsenceOfChemicalEntity.yaml |
| Name | abnormalAbsenceOfChemicalEntity |
| Classes | PATO:0000462, PATO:0000460, CHEBI:24431,  |
| Variables | chemical entity (CHEBI:24431),  |
| Contributors | [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalAbsenceOfChemicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalAbsenceOfChemicalEntity.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormalAbsenceOfChemicalEntity.tsv) |

### Abnormal absence of chemical entity in location
*A chemical (entity) such as sodium is missing from an anatomical location, such as blood.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalAbsenceOfChemicalEntityInLocation.yaml |
| Name | abnormalAbsenceOfChemicalEntityInLocation |
| Classes | PATO:0000462, PATO:0000460, CHEBI:24431, BFO:0000004,  |
| Variables | chemical entity (CHEBI:24431), independent continuant (BFO:0000004),  |
| Contributors | [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalAbsenceOfChemicalEntityInLocation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalAbsenceOfChemicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalAbsenceOfChemicalEntityInLocation.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormalAbsenceOfChemicalEntityInLocation.tsv) |

### Abnormal absence of molecular function
*An abnormal absence of a molecular function i.e., absent or undetectable level of chromatin binding.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalAbsenceOfMolecularFunction.yaml |
| Name | abnormalAbsenceOfMolecularFunction |
| Classes | PATO:0000462, PATO:0000460, GO:0003674,  |
| Variables | molecular function (GO:0003674),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormalAbsenceOfMolecularFunction.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormalAbsenceOfMolecularFunction.tsv) |

### Abnormal absence of motility of cellular component in location
*Absence of the ability to move (immotility) a cellular component in an anatomical entity/location.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalAbsenceOfMotilityOfCellularComponentInLocation.yaml |
| Name | abnormalAbsenceOfMotilityOfCellularComponentInLocation |
| Classes | PATO:0000462, PATO:0000460, GO:0005575, BFO:0000004, GO:0006928,  |
| Variables | cellular component (GO:0005575), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples |  |

### Abnormal absence of pigmentation of anatomical entity
*Complete loss of pigmentation in an antomical entity. i.e., unpigmented eye.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalAbsenceOfPigmentationOfAnatomicalEntity.yaml |
| Name | abnormalAbsenceOfPigmentationOfAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0002249,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015),  |
| Examples | [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormalAbsenceOfPigmentationOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalAbsenceOfPigmentationOfAnatomicalEntity.tsv) |

### Abnormal absence of protein localization in cellular component
*Any process in which a protein is transported to, or maintained in, a specific sub-cellular location that normally occurs does not occur.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalAbsenceOfProteinLocalizationInCellularComponent.yaml |
| Name | abnormalAbsenceOfProteinLocalizationInCellularComponent |
| Classes | PATO:0000460, PATO:0000462, GO:0008104, GO:0005575,  |
| Variables | cellular component (GO:0005575),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-4532-2703](https://orcid.org/0000-0002-4532-2703), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172),  |
| Examples | [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormalAbsenceOfProteinLocalizationInCellularComponent.tsv) |

### Abnormal agenesis of anatomical entity
*Abnormal absence of a tissue or organ due to failure to develop. Agenesis is a specific process to describe the failure of a tissue to develop, such as HP_0001341 Olfactory lobe agenesis. It is more specific than an absent anatomical entity.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalAgenesisOfAnatomicalEntity.yaml |
| Name | abnormalAgenesisOfAnatomicalEntity |
| Classes | PATO:0002291, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalAgenesisOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormalAgenesisOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalAgenesisOfAnatomicalEntity.tsv) |

### Abnormal anatomical entity not parts
*Any unspecified abnormality of an anatomical entity, but excluding its parts. For example, abnormal cardiovascular system if it is not supposed to subsume abnormal heart.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalAnatomicalEntityNotParts.yaml |
| Name | abnormalAnatomicalEntityNotParts |
| Classes | PATO:0000001, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalAnatomicalEntityNotParts.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalAnatomicalEntityNotParts.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalAnatomicalEntityNotParts.tsv) |

### Abnormal arrested development during stage
*Arrest or prematurely terminated development at a specific development stage in an organism.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalArrestedDevelopmentDuringStage.yaml |
| Name | abnormalArrestedDevelopmentDuringStage |
| Classes | PATO:0000297, PATO:0000460, GO:0032502, UBERON:0000105,  |
| Variables | developmental_process (GO:0032502), life_cycle_stage (UBERON:0000105),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-4532-2703](https://orcid.org/0000-0002-4532-2703), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172),  |
| Examples |  |

### Abnormal behavior
*Any unspecified abnormality of a behavior, such as HP_0012433 abnormal social behavior.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalBehavior.yaml |
| Name | abnormalBehavior |
| Classes | PATO:0001236, PATO:0000460, NBO:0000313,  |
| Variables | behavior process (NBO:0000313),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-1373-1705](https://orcid.org/0000-0002-1373-1705), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalBehavior.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalBehavior.tsv) |

### Abnormal biological process
*Any unspecified abnormality of a biological process, a specific objective that the organism is genetically programmed to achieve, such as apoptosis or cell proliferation. i.e. HP_0012647 'Abnormal inflammatory response'*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalBiologicalProcess.yaml |
| Name | abnormalBiologicalProcess |
| Classes | PATO:0001236, PATO:0000460, GO:0008150,  |
| Variables | biological_process (GO:0008150),  |
| Contributors | [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-1373-1705](https://orcid.org/0000-0002-1373-1705), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalBiologicalProcess.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalBiologicalProcess.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalBiologicalProcess.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormalBiologicalProcess.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormalBiologicalProcess.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalBiologicalProcess.tsv) [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormalBiologicalProcess.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormalBiologicalProcess.tsv) |

### Abnormal biological process in location
**

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalBiologicalProcessInLocation.yaml |
| Name | abnormalBiologicalProcessInLocation |
| Classes | PATO:0001236, PATO:0000460, GO:0008150, BFO:0000004,  |
| Variables | biological process (GO:0008150), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalBiologicalProcessInLocation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalBiologicalProcessInLocation.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalBiologicalProcessInLocation.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormalBiologicalProcessInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalBiologicalProcessInLocation.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormalBiologicalProcessInLocation.tsv) |

### Abnormal cell differentiation
**

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalCellDifferentiation.yaml |
| Name | abnormalCellDifferentiation |
| Classes | PATO:0001236, PATO:0000460, GO:0048869, CL:0000003,  |
| Variables | cell type (CL:0000003),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779),  |
| Examples |  |

### Abnormal cell proliferation acting on cells of type
*Any abnormal cell proliferation in a specific cell type, such as abnormal retinal vascular proliferation.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalCellProliferationActingOnCellsOfType.yaml |
| Name | abnormalCellProliferationActingOnCellsOfType |
| Classes | PATO:0000460, GO:0008283, CL:0000003, PATO:0001236,  |
| Variables | cell (CL:0000003),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples |  |

### Abnormal cell proliferation acting on cells of type in location
*Any abnormal cell proliferation in a specific cell type in a location, such as abnormal retinal vascular proliferation in the eye.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalCellProliferationActingOnCellsOfTypeInLocation.yaml |
| Name | abnormalCellProliferationActingOnCellsOfTypeInLocation |
| Classes | PATO:0000460, GO:0008283, CL:0000003, PATO:0001236, UBERON:0001062,  |
| Variables | cell (CL:0000003), anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples |  |

### Abnormal cell proliferation in anatomical entity
*Any abnormality in cell proliferation in anatomical entity, such as 'abnormal B cell proliferation in peripheral blood'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalCellProliferationInAnatomicalEntity.yaml |
| Name | abnormalCellProliferationInAnatomicalEntity |
| Classes | PATO:0001236, PATO:0000460, GO:0008283, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalCellProliferationInAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalCellProliferationInAnatomicalEntity.tsv) |

### Abnormal cellular component
*Any unspecified abnormality of a cellular component, such as an abnormal mitochondria.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns/abnormalCellularComponent.yaml |
| Name | abnormalCellularComponent |
| Classes | PATO:0000001, PATO:0000460, GO:0005575,  |
| Variables | cellular component (GO:0005575),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalCellularComponent.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalCellularComponent.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormalCellularComponent.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormalCellularComponent.tsv) |

### Abnormal cellular component process
*An abnormal biological process involving the participation of a cellular component.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalCellularComponentProcess.yaml |
| Name | abnormalCellularComponentProcess |
| Classes | PATO:0001236, PATO:0000460, GO:0008150, GO:0005575,  |
| Variables | cellular component (GO:0005575), biological process (GO:0008150),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779),  |
| Examples | [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormalCellularComponentProcess.tsv) |

### Abnormal coiling of anatomical entity
*An anatomical entity that is abnormally coiled, or wound into a spiral or sequence of rings, like an abnormally coiled tail. This pattern captures both more coiled AND less coiled anatomical entities.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalCoilingOfAnatomicalEntity.yaml |
| Name | abnormalCoilingOfAnatomicalEntity |
| Classes | PATO:0000404, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalCoilingOfAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalCoilingOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormalCoilingOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalCoilingOfAnatomicalEntity.tsv) |

### Abnormal color of anatomical entity
*Any unspecified abnormality of the color of an anatomical entity, such as HP_0012086 'Abnormal urinary color'. Abnormal pigmentation does not necessarily mean a change in color, nor does a change in color require that the root cause be due to a change in the pigment cells/granules. Pigment cells are specialized cell type and can contain different colored pigment granules. There are also differences in the process of pigmentation (such as pattern of cells or pattern of granules in those cells) as well as the dependent continuant that is the color.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalColorOfAnatomicalEntity.yaml |
| Name | abnormalColorOfAnatomicalEntity |
| Classes | PATO:0000014, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalColorOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalColorOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalColorOfAnatomicalEntity.tsv) |

### Abnormal color of anatomical entity by color
*Anatomical entity with an abnormal specified color.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalColorOfAnatomicalEntityByColor.yaml |
| Name | abnormalColorOfAnatomicalEntityByColor |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000014,  |
| Variables | anatomical_entity (UBERON:0001062), color (PATO:0000014),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalColorOfAnatomicalEntityByColor.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalColorOfAnatomicalEntityByColor.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalColorOfAnatomicalEntityByColor.tsv) |

### Abnormal concentration of chemical entity
**

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalConcentrationOfChemicalEntity.yaml |
| Name | abnormalConcentrationOfChemicalEntity |
| Classes | PATO:0000033, PATO:0000460, CHEBI:24431,  |
| Variables | chemical (CHEBI:24431),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples |  |

### Abnormal concentration of chemical entity in location
*An abnormal concentration of a chemical, like sodium, in a location, like the blood.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalConcentrationOfChemicalEntityInLocation.yaml |
| Name | abnormalConcentrationOfChemicalEntityInLocation |
| Classes | PATO:0000033, PATO:0000460, CHEBI:24431, BFO:0000004,  |
| Variables | chemical (CHEBI:24431), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples |  |

### Abnormal constriction of anatomical entity
*An anatomical entity that is being drawn together, compressed or squeezed physically, such as HP_0001650	Aortic valve stenosis.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalConstrictionOfAnatomicalEntity.yaml |
| Name | abnormalConstrictionOfAnatomicalEntity |
| Classes | PATO:0001847, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalConstrictionOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalConstrictionOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalConstrictionOfAnatomicalEntity.tsv) |

### Abnormal degeneration of anatomical entity
*deterioration or loss of function of a tissue that was once present, such as HP_0000546 retinal degeneration.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalDegenerationOfAnatomicalEntity.yaml |
| Name | abnormalDegenerationOfAnatomicalEntity |
| Classes | PATO:0000639, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalDegenerationOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalDegenerationOfAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalDegenerationOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalDegenerationOfAnatomicalEntity.tsv) |

### Abnormal degeneration of anatomical entity in location
*Deterioration or loss of function of a tissue that was once present in a location.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalDegenerationOfAnatomicalEntityInLocation.yaml |
| Name | abnormalDegenerationOfAnatomicalEntityInLocation |
| Classes | PATO:0000639, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalDegenerationOfAnatomicalEntityInLocation.tsv) |

### Abnormal degeneration of cellular component
*Deterioration or loss of function of a cellular component that was once present.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalDegenerationOfCellularComponent.yaml |
| Name | abnormalDegenerationOfCellularComponent |
| Classes | PATO:0000639, PATO:0000460, GO:0005575,  |
| Variables | cellular component (GO:0005575),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalDegenerationOfCellularComponent.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalDegenerationOfCellularComponent.tsv) |

### Abnormal degeneration of cellular component in location
*Deterioration or loss of function of a cellular component that was once present in a location, such as HP_0007305 CNS demyelination.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalDegenerationOfCellularComponentInLocation.yaml |
| Name | abnormalDegenerationOfCellularComponentInLocation |
| Classes | PATO:0000639, PATO:0000460, GO:0005575, BFO:0000004,  |
| Variables | cellular component (GO:0005575), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalDegenerationOfCellularComponentInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalDegenerationOfCellularComponentInLocation.tsv) |

### Abnormal development of anatomical entity
*A phenotype in which an organism exhibits an abnormal development of some anatomical entity. For example, abnormal development of the heart.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalDevelopmentOfAnatomicalEntity.yaml |
| Name | abnormalDevelopmentOfAnatomicalEntity |
| Classes | PATO:0001236, PATO:0000460, GO:0032502, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015),  |
| Examples | [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalDevelopmentOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormalDevelopmentOfAnatomicalEntity.tsv) |

### Abnormal distance between anatomical entities
*Distance between two anatomical entites has deviated from normal. For example, PLANP_0000512 'abnormal distance between eye and eye'*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalDistanceBetweenAnatomicalEntities.yaml |
| Name | abnormalDistanceBetweenAnatomicalEntities |
| Classes | PATO:0000460, UBERON:0001062, UBERON:0001062, PATO:0000040,  |
| Variables | anatomical_entity1 (UBERON:0001062), anatomical_entity2 (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormalDistanceBetweenAnatomicalEntities.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalDistanceBetweenAnatomicalEntities.tsv) |

### Abnormal efficacy of protein localization in cellular component
*Abnormal efficacy or output of any process in which a protein is transported to, or maintained in, a specific sub-cellular location.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalEfficacyOfProteinLocalizationInCellularComponent.yaml |
| Name | abnormalEfficacyOfProteinLocalizationInCellularComponent |
| Classes | PATO:0000460, PATO:0015002, GO:0008104, GO:0005575,  |
| Variables | cellular component (GO:0005575),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-4532-2703](https://orcid.org/0000-0002-4532-2703), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172),  |
| Examples | [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormalEfficacyOfProteinLocalizationInCellularComponent.tsv) |

### Abnormal functionality of anatomical entity
*Dysfunction of an entity, such as an anatomical entity, like an organ, for example HP_0030964 'Abnormal aortic physiology'*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalFunctionalityOfAnatomicalEntity.yaml |
| Name | abnormalFunctionalityOfAnatomicalEntity |
| Classes | PATO:0001509, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalFunctionalityOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalFunctionalityOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalFunctionalityOfAnatomicalEntity.tsv) |

### Abnormal functionality of cellular component
*Dysfunction of a cellular component, such as an organelle, for example HP:0003398 Abnormal synaptic transmission at the neuromuscular junction'*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalFunctionalityOfCellularComponent.yaml |
| Name | abnormalFunctionalityOfCellularComponent |
| Classes | PATO:0001509, PATO:0000460, GO:0005575,  |
| Variables | cellular component (GO:0005575),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalFunctionalityOfCellularComponent.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalFunctionalityOfCellularComponent.tsv) |

### Abnormal functionality of part of anatomical entity
*Dysfunction of a part of an anatomical entity, such as HP_0007905 'Abnormal iris vasculature'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalFunctionalityOfPartOfAnatomicalEntity.yaml |
| Name | abnormalFunctionalityOfPartOfAnatomicalEntity |
| Classes | PATO:0001509, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalFunctionalityOfPartOfAnatomicalEntity.tsv) |

### Abnormal has extra parts of type anatomical entity
*extra parts of an anatomical entity. For example, has extra parts of type eye.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalHasExtraPartsOfTypeAnatomicalEntity.yaml |
| Name | abnormalHasExtraPartsOfTypeAnatomicalEntity |
| Classes | PATO:0002002, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalHasExtraPartsOfTypeAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalHasExtraPartsOfTypeAnatomicalEntity.tsv) |

### Abnormal has extra parts of type anatomical entity in location
*extra parts of an anatomical entity in a location. For example, has extra parts of type eye in the head.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns/abnormalHasExtraPartsOfTypeAnatomicalEntityInLocation.yaml |
| Name | abnormalHasExtraPartsOfTypeAnatomicalEntityInLocation |
| Classes | PATO:0002002, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalHasExtraPartsOfTypeAnatomicalEntityInLocation.tsv) |

### Abnormal has fewer parts of type anatomical entity
*An anatomical entity has fewer instances of a part. For example, has the hand has fewer digits. Consider using decreased number of anatomical entity in location instead.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalHasFewerPartsOfTypeAnatomicalEntity.yaml |
| Name | abnormalHasFewerPartsOfTypeAnatomicalEntity |
| Classes | PATO:0002001, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062), anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalHasFewerPartsOfTypeAnatomicalEntity.tsv) |

### Abnormal has fewer parts of type anatomical entity in location
*An anatomical entity (which is located somewhere) has fewer instances of a part. For example, the hand (which is part of the right arm) has fewer digits. Consider using decreased number of anatomical entity in location instead.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns/abnormalHasFewerPartsOfTypeAnatomicalEntityInLocation.yaml |
| Name | abnormalHasFewerPartsOfTypeAnatomicalEntityInLocation |
| Classes | PATO:0002001, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalHasFewerPartsOfTypeAnatomicalEntityInLocation.tsv) |

### Abnormal height of anatomical entity
*An abnormally tall or short anatomical structure, such as HP:0000002 Abnormality of body height.'*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalHeightOfAnatomicalEntity.yaml |
| Name | abnormalHeightOfAnatomicalEntity |
| Classes | PATO:0000119, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalHeightOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalHeightOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalHeightOfAnatomicalEntity.tsv) |

### Abnormal length of anatomical entity
*Use this phenotype pattern when the length of an anatomical entity is abnormal. If the anatomical entity is specifically longer or shorter than normal, then use the more specific increased length or decreased length phenotype patterns, respectively.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalLengthOfAnatomicalEntity.yaml |
| Name | abnormalLengthOfAnatomicalEntity |
| Classes | PATO:0000122, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723),  |
| Examples |  |

### Abnormal level of chemical entity with role
*An abnormal level of a chemical with a specific role, such as a metabolite or hormone like androgen, for example, 'abnormal androgen level'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalLevelOfChemicalEntityWithRole.yaml |
| Name | abnormalLevelOfChemicalEntityWithRole |
| Classes | PATO:0000070, PATO:0000460, CHEBI:24431, CHEBI:50906,  |
| Variables | role (CHEBI:50906),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples |  |

### Abnormal level of chemical entity with role in location
*An abnormal level of a chemical with a specific role, such as a metabolite or hormone like androgen, in a location, such as blood. For example, HP_0030347 'Abnormal circulating androgen level'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalLevelOfChemicalEntityWithRoleInLocation.yaml |
| Name | abnormalLevelOfChemicalEntityWithRoleInLocation |
| Classes | PATO:0000070, PATO:0000460, CHEBI:24431, CHEBI:50906, BFO:0000004,  |
| Variables | role (CHEBI:50906), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalLevelOfChemicalEntityWithRoleInLocation.tsv) |

### Abnormal mass density of anatomical entity
*Abnormal mass density (mass per unit volume) of an anatomical entity,  for example abnormal bone mineral density. This pattern is not to be used for count per area (e.g. cell count) phenotypes.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalMassDensityOfAnatomicalEntity.yaml |
| Name | abnormalMassDensityOfAnatomicalEntity |
| Classes | PATO:0001019, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalMassDensityOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalMassDensityOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalMassDensityOfAnatomicalEntity.tsv) |

### Abnormal mass density of anatomical entity in location
*Abnormal mass density (mass per unit volume) of an anatomical entity in a location. For example, this pattern can be used when a bone element at a location exhibits abnormal mass density. This pattern is not to be used for count per area (e.g. cell count) phenotypes.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalMassDensityOfAnatomicalEntityInLocation.yaml |
| Name | abnormalMassDensityOfAnatomicalEntityInLocation.yaml |
| Classes | PATO:0001019, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical_entity (UBERON:0001062), independent_continuant (BFO:0000004),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723),  |
| Examples |  |

### Abnormal mobility of anatomical entity
*An abnormality of the ability to move (mobility) an anatomical entity, including cells. Examples include HP_0006256 'Abnormality of hand joint mobility' and MP_0008069 'abnormal joint mobility'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalMobilityOfAnatomicalEntity.yaml |
| Name | abnormalMobilityOfAnatomicalEntity |
| Classes | PATO:0000004, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalMobilityOfAnatomicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormalMobilityOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalMobilityOfAnatomicalEntity.tsv) |

### Abnormal molecular function
*An abnormality in a molecular function, like abnormal DNA ligase activity, or abnormal catalase activity.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalMolecularFunction.yaml |
| Name | abnormalMolecularFunction |
| Classes | PATO:0001236, PATO:0000460, GO:0003674,  |
| Variables | molecular function (GO:0003674),  |
| Contributors | [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961),  |
| Examples | [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalMolecularFunction.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormalMolecularFunction.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalMolecularFunction.tsv) [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormalMolecularFunction.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormalMolecularFunction.tsv) |

### Abnormal morphology of anatomical entity
*An morphologically abnormal anatomical entity. Morphological encompasses shape and colour, but more specific patterns exist.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalMorphologyOfAnatomicalEntity.yaml |
| Name | abnormalMorphologyOfAnatomicalEntity |
| Classes | PATO:0000051, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalMorphologyOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalMorphologyOfAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalMorphologyOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormalMorphologyOfAnatomicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormalMorphologyOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalMorphologyOfAnatomicalEntity.tsv) |

### Abnormal morphology of anatomical entity in location
*An abnormally shaped anatomical entity, in a specific location, like an abnormally shaped tip of the finger, or bone of the lower limb.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalMorphologyOfAnatomicalEntityInLocation.yaml |
| Name | abnormalMorphologyOfAnatomicalEntityInLocation |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000051, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalMorphologyOfAnatomicalEntityInLocation.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormalMorphologyOfAnatomicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalMorphologyOfAnatomicalEntityInLocation.tsv) |

### Abnormal morphology of cellular component
*An abnormality in the morphology of a cellular component, like an abnormal morphology of mitochondria.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalMorphologyOfCellularComponent.yaml |
| Name | abnormalMorphologyOfCellularComponent |
| Classes | PATO:0000051, PATO:0000460, GO:0005575,  |
| Variables | cellular component (GO:0005575),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalMorphologyOfCellularComponent.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalMorphologyOfCellularComponent.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalMorphologyOfCellularComponent.tsv) [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormalMorphologyOfCellularComponent.tsv) [fypo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/fypo/abnormalMorphologyOfCellularComponent.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormalMorphologyOfCellularComponent.tsv) |

### Abnormal morphology of part of anatomical entity
*An morphological abnormality in a part of an anatomical entity. Morphology encompasses shape and colour, but more specific patterns exist. Example: HP:0012718 Morphological abnormality of the gastrointestinal tract. Note that pattern is very powerful, because it captures all parts of an anatomical entity, down to the cells! If in doubt, consider using abnormalMorphologyOfAnatomicalEntity instead, which captures only the abnormal morphology of the referenced anatomical entity as a whole.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalMorphologyOfPartOfAnatomicalEntity.yaml |
| Name | abnormalMorphologyOfPartOfAnatomicalEntity |
| Classes | PATO:0000051, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalMorphologyOfPartOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalMorphologyOfPartOfAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalMorphologyOfPartOfAnatomicalEntity.tsv) |

### Abnormal motility of cellular component
*An abnormality of the ability to move (motility) a cellular component/cells. Examples include 'Abnormal cilium motility'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalMotilityOfCellularComponent.yaml |
| Name | abnormalMotilityOfCellularComponent |
| Classes | PATO:0001236, PATO:0000460, GO:0005575, GO:0006928,  |
| Variables | cellular component (GO:0005575),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779),  |
| Examples |  |

### Abnormal number of anatomical entity
*abnormal or altered number of anatomical enities. For example, has abnormal number of heads.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalNumberOfAnatomicalEntity.yaml |
| Name | abnormalNumberOfAnatomicalEntity |
| Classes | PATO:0000070, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalNumberOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalNumberOfAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalNumberOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormalNumberOfAnatomicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormalNumberOfAnatomicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormalNumberOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalNumberOfAnatomicalEntity.tsv) |

### Abnormal number of anatomical entity in location
*abnormal or altered number of anatomical entities in location. For example, has abnormal number of eyes in the head.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns/dosdp-dev/abnormalNumberOfAnatomicalEntityInLocation.yaml |
| Name | abnormalNumberOfAnatomicalEntityInLocation |
| Classes | PATO:0000070, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalNumberOfAnatomicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalNumberOfAnatomicalEntityInLocation.tsv) |

### Abnormal number of cellular component
*abnormal or altered number of cellular components. For example, HP_0012102 Abnormal mitochondrial number.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalNumberOfCellularComponent.yaml |
| Name | abnormalNumberOfCellularComponent |
| Classes | PATO:0000070, PATO:0000460, GO:0005575,  |
| Variables | cellular component (GO:0005575),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalNumberOfCellularComponent.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalNumberOfCellularComponent.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalNumberOfCellularComponent.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormalNumberOfCellularComponent.tsv) |

### Abnormal persistence of anatomical entity
*The unexpected persistent presence of an anatomical entity that is not expected to be there, that should have been removed, ejected, replaced, etc, but continues to be present. For example, HP_0006335	Persistence of primary teeth, where the teeth should have fallen out during the normal developmental process, but continue to persist.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalPersistenceOfAnatomicalEntity.yaml |
| Name | abnormalPersistenceOfAnatomicalEntity |
| Classes | PATO:0000082, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalPersistenceOfAnatomicalEntity.tsv) |

### Abnormal pigmentation of anatomical entity
*Any change in the amount of pigmentation in an anatomical Entity. i.e. Abnormal pigmentation of the epidermis*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalPigmentationOfAnatomicalEntity.yaml |
| Name | abnormalPigmentationOfAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0002247,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalPigmentationOfAnatomicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormalPigmentationOfAnatomicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormalPigmentationOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalPigmentationOfAnatomicalEntity.tsv) |

### Abnormal position of anatomical entity
*An abnormal placement or position of an anatomical entity, such as HP_0004307 'Abnormal anatomic location of the heart'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalPositionOfAnatomicalEntity.yaml |
| Name | abnormalPositionOfAnatomicalEntity |
| Classes | PATO:0000140, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalPositionOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalPositionOfAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalPositionOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalPositionOfAnatomicalEntity.tsv) |

### Abnormal position of anatomical entity in location
*An abnormally placed anatomical entity, in a position it is not normally in, such as an abnormally placed/position of a valve in the heart.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalPositionOfAnatomicalEntityInLocation.yaml |
| Name | abnormalPositionOfAnatomicalEntityInLocation |
| Classes | PATO:0000140, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalPositionOfAnatomicalEntityInLocation.tsv) |

### Abnormal proportion of cell type in location
*An abnormal proportion of a cell, in a location, like the blood. For example: HP_0020111 'Abnormal CD4+CD25+ regulatory T cell proportion'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalProportionOfCellTypeInLocation.yaml |
| Name | abnormalProportionOfCellTypeInLocation |
| Classes | PATO:0001470, PATO:0000460, CL:0000000, BFO:0000004,  |
| Variables | cell (CL:0000000), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalProportionOfCellTypeInLocation.tsv) |

### Abnormal proportion of cell type towards cell type in location
*An abnormal proportion of a cell type relative to another cell type, in a location, like the blood. For example: 'Abnormal CD4+CD25+ regulatory T cell proportion relative to T cells in the blood'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalProportionOfCellTypeTowardsCellTypeInLocation.yaml |
| Name | abnormalProportionOfCellTypeTowardsCellTypeInLocation |
| Classes | PATO:0001470, PATO:0000460, CL:0000000, BFO:0000004,  |
| Variables | cell (CL:0000000), cell (CL:0000000), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalProportionOfCellTypeTowardsCellTypeInLocation.tsv) |

### Abnormal rate of biological process
*Changed rate of a biological process, i.e. changed number of events per unit time of a biological process, or changed output of a continuous biological process).*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalRateOfBiologicalProcess.yaml |
| Name | abnormalRateOfBiologicalProcess |
| Classes | PATO:0000161, PATO:0000460, GO:0008150,  |
| Variables | biological_process (GO:0008150),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalRateOfBiologicalProcess.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalRateOfBiologicalProcess.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalRateOfBiologicalProcess.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalRateOfBiologicalProcess.tsv) [fypo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/fypo/abnormalRateOfBiologicalProcess.tsv) |

### Abnormal rate of biological process before stage
*An abnormal rate of a biological process that must occur before progresssing to the next developmental stage in an organism. For example FBcv:0000450 'abnormal developmental rate', that must occur during development (before mature adult stage).*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalRateOfBiologicalProcessBeforeStage.yaml |
| Name | abnormalRateOfBiologicalProcessBeforeStage |
| Classes | PATO:0000460, PATO:0000161, GO:0008150, UBERON:0000105,  |
| Variables | biological_process (GO:0008150), life_cycle_stage (UBERON:0000105),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-1373-1705](https://orcid.org/0000-0002-1373-1705),  |
| Examples |  |

### Abnormal rate of biological process in location
*Changed rate of a biological process, i.e. changed number of events per unit time of a biological process, or changed output of a continuous biological process) in a location.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalRateOfBiologicalProcessInLocation.yaml |
| Name | abnormalRateOfBiologicalProcessInLocation |
| Classes | PATO:0000161, PATO:0000460, GO:0008150, BFO:0000004,  |
| Variables | biological_process (GO:0008150), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalRateOfBiologicalProcessInLocation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalRateOfBiologicalProcessInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalRateOfBiologicalProcessInLocation.tsv) |

### Abnormal rate of development during stage
*An abnormally delayed or accelerated rate of a developmental process during a developmental stage in an organism.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalRateOfDevelopmentDuringStage.yaml |
| Name | abnormalRateOfDevelopmentDuringStage |
| Classes | PATO:0000460, PATO:0000161, GO:0032502, UBERON:0000105,  |
| Variables | developmental_process (GO:0032502), life_cycle_stage (UBERON:0000105),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-4532-2703](https://orcid.org/0000-0002-4532-2703), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172),  |
| Examples |  |

### Abnormal resistance of whole organism to entity
*A phenotype in which an organism shows a changed resistance to a something, for example a chemical or a process, and it is unknown unspecified whether the resistance appears increased or decreased.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalResistanceOfWholeOrganismToEntity.yaml |
| Name | abnormalResistanceOfWholeOrganismToEntity.yaml |
| Classes | PATO:0001178, PATO:0000460, CARO:0010004, BFO:0000001,  |
| Variables | entity (BFO:0000001),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779),  |
| Examples |  |

### Abnormal shape of anatomical entity by shape type
*Anatomical enity with an abnormal shape of a specified shape, e.g. columnar shaped head.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalShapeOfAnatomicalEntityByShapeType.yaml |
| Name | abnormalShapeOfAnatomicalEntityByShapeType |
| Classes | PATO:0000052, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062), shape (PATO:0000052),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalShapeOfAnatomicalEntityByShapeType.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalShapeOfAnatomicalEntityByShapeType.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalShapeOfAnatomicalEntityByShapeType.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormalShapeOfAnatomicalEntityByShapeType.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormalShapeOfAnatomicalEntityByShapeType.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormalShapeOfAnatomicalEntityByShapeType.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalShapeOfAnatomicalEntityByShapeType.tsv) |

### Abnormal shape of anatomical entity by shape type in location
*Anatomical entity with an abnormal shape of a specified shape in a particular location, e.g. Y-shaped bone in the leg.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalShapeOfAnatomicalEntityByShapeTypeInLocation.yaml |
| Name | abnormalShapeOfAnatomicalEntityByShapeTypeInLocation |
| Classes | PATO:0000052, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), shape (PATO:0000052), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalShapeOfAnatomicalEntityByShapeTypeInLocation.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormalShapeOfAnatomicalEntityByShapeTypeInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalShapeOfAnatomicalEntityByShapeTypeInLocation.tsv) |

### Abnormal shape of physical entity
*abnormal shape of an anatomical entity or a measurement of a process, such as an ECG wave*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalShapeOfPhysicalEntity.yaml |
| Name | abnormalShapeOfPhysicalEntity |
| Classes | PATO:0000052, PATO:0000460, BFO:0000002,  |
| Variables | entity (BFO:0000002),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalShapeOfPhysicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalShapeOfPhysicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormalShapeOfPhysicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormalShapeOfPhysicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalShapeOfPhysicalEntity.tsv) [fypo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/fypo/abnormalShapeOfPhysicalEntity.tsv) |

### Abnormal size of anatomical entity
*An abnormal size (the relative extent of something) of an anatomical entity, such as HP_0012504 'Abnormal size of pituitary gland'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalSizeOfAnatomicalEntity.yaml |
| Name | abnormalSizeOfAnatomicalEntity |
| Classes | PATO:0000117, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-1373-1705](https://orcid.org/0000-0002-1373-1705), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalSizeOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalSizeOfAnatomicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormalSizeOfAnatomicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormalSizeOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalSizeOfAnatomicalEntity.tsv) |

### Abnormal size of cellular component
*An abnormal size (the relative extent of something) of a cellular component, such as abnormal vacuole size.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalSizeOfCellularComponent.yaml |
| Name | abnormalSizeOfCellularComponent |
| Classes | PATO:0000117, PATO:0000460, GO:0005575,  |
| Variables | cellular component (GO:0005575),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalSizeOfCellularComponent.tsv) |

### Abnormal spatial pattern of anatomical entity
*Any unspecified abnormality of the spatial pattern (ie the repetition of the placement of its parts) of an anatomical entity, such as HP_0010720 Abnormal hair pattern.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalSpatialPatternOfAnatomicalEntity.yaml |
| Name | abnormalSpatialPatternOfAnatomicalEntity |
| Classes | PATO:0000060, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalSpatialPatternOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalSpatialPatternOfAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormalSpatialPatternOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormalSpatialPatternOfAnatomicalEntity.tsv) |

### Abnormal stability of anatomical entity
*An abnormality in the ability of an anatomical entity to to retain a particular structure or homeostatic set of structures. For example, abnormal spore stability.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalStabilityOfAnatomicalEntity.yaml |
| Name | abnormalStabilityOfAnatomicalEntity |
| Classes | PATO:0015026, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-4532-2703](https://orcid.org/0000-0002-4532-2703),  |
| Examples |  |

### Abnormal thickness of anatomical entity
*Use this phenotype pattern when an anatomical entity displays abnormal thickness.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalThicknessOfAnatomicalEntity.yaml |
| Name | abnormalThicknessOfAnatomicalEntity |
| Classes | PATO:0000915, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597),  |
| Examples |  |

### Abnormal weight of anatomical entity
*An abnormality of the mass of an anatomical entity, e.g. increased or decreased mass of the whole organism. NOTE: We are using mass (PATO:0000125), not weight, to model this phenotype, see also https://github.com/obophenotype/bio-attribute-ontology/issues/39*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalWeightOfAnatomicalEntity.yaml |
| Name | abnormalWeightOfAnatomicalEntity |
| Classes | PATO:0000125, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormalWeightOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormalWeightOfAnatomicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormalWeightOfAnatomicalEntity.tsv) |

### Abnormally apoptotic anatomical entity
*The abnormal presence of programmed cell death (apoptosis), consisting of blebbing of the nucleus and DNA fragmentation, in an anatomical entity.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyApoptoticAnatomicalEntity.yaml |
| Name | abnormallyApoptoticAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000638,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyApoptoticAnatomicalEntity.tsv) |

### Abnormally apoptotic anatomical entity in location
*The presence of abnormal programmed cell death (apoptosis), consisting of blebbing of the nucleus and DNA fragmentation, in an anatomical entity in some location.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyApoptoticAnatomicalEntityInLocation.yaml |
| Name | abnormallyApoptoticAnatomicalEntityInLocation |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000638, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyApoptoticAnatomicalEntityInLocation.tsv) |

### Abnormally arrested biological process
*A partial failure or arrested development of a biological process, such as arrested cell migration.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyArrestedBiologicalProcess.yaml |
| Name | abnormallyArrestedBiologicalProcess |
| Classes | PATO:0000297, PATO:0000460, GO:0008150,  |
| Variables | biological_process (GO:0008150),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyArrestedBiologicalProcess.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyArrestedBiologicalProcess.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyArrestedBiologicalProcess.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyArrestedBiologicalProcess.tsv) [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormallyArrestedBiologicalProcess.tsv) |

### Abnormally arrested biological process in location
*A process that started but failed to occur, such as cell migration in the neural crest.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyArrestedBiologicalProcessInLocation.yaml |
| Name | abnormallyArrestedBiologicalProcessInLocation |
| Classes | PATO:0000297, PATO:0000460, GO:0008150, BFO:0000004,  |
| Variables | biological_process (GO:0008150), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyArrestedBiologicalProcessInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyArrestedBiologicalProcessInLocation.tsv) |

### Abnormally asymmetrical anatomical entity
*Use this pattern for morphologically asymmetrical anatomical entity phenotypes. Here abnormal asymmetry includes the lack of radial, bilateral and other types of symmetry in size, shape, and relative position of anatomical entities, e.g. craniofacial asymmetry or foot asymmetry.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyAsymmetricalAnatomicalEntity.yaml |
| Name | abnormallyAsymmetricalAnatomicalEntity |
| Classes | PATO:0000616, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyAsymmetricalAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyAsymmetricalAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyAsymmetricalAnatomicalEntity.tsv) |

### Abnormally bent anatomical entity
*An anatomical entity that has one or more angles in its length, such as a bent/crooked nose.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyBentAnatomicalEntity.yaml |
| Name | abnormallyBentAnatomicalEntity |
| Classes | PATO:0000617, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyBentAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyBentAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyBentAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyBentAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyBentAnatomicalEntity.tsv) |

### Abnormally closed anatomical entity
**

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyClosedAnatomicalEntity.yaml |
| Name | abnormallyClosedAnatomicalEntity |
| Classes | PATO:0000608, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyClosedAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyClosedAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyClosedAnatomicalEntity.tsv) |

### Abnormally curled anatomical entity
*Use this phenotype pattern when an anatomical entity is abnormally curled, waved, coiled or has  corkscrew-like or spiral shaped curl or curls.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyCurledAnatomicalEntity.yaml |
| Name | abnormallyCurledAnatomicalEntity |
| Classes | PATO:0000405, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723),  |
| Examples |  |

### Abnormally curved anatomical entity by orientation
**

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyCurvedAnatomicalEntityByOrientation.yaml |
| Name | abnormallyCurvedAnatomicalEntityByOrientation |
| Classes | PATO:0000406, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062), curved (PATO:0000406),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyCurvedAnatomicalEntityByOrientation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyCurvedAnatomicalEntityByOrientation.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyCurvedAnatomicalEntityByOrientation.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormallyCurvedAnatomicalEntityByOrientation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyCurvedAnatomicalEntityByOrientation.tsv) |

### Abnormally decreased coiling of anatomical entity
*An anatomical entity (or whole organism) that exhibits abnormally decreased coiling, or wound into a spiral or sequence of rings, like an abnormally decreased coiling of tail.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedCoilingOfAnatomicalEntity.yaml |
| Name | abnormallyDecreasedCoilingOfAnatomicalEntity |
| Classes | PATO:0001796, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedCoilingOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedCoilingOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedCoilingOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedCoilingOfAnatomicalEntity.tsv) |

### Abnormally decreased distance between anatomical entities
*The distance between two anatomical entities is decreased. For example the distance between eyes.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedDistanceBetweenAnatomicalEntities.yaml |
| Name | abnormallyDecreasedDistanceBetweenAnatomicalEntities |
| Classes | PATO:0000460, UBERON:0001062, UBERON:0001062, PATO:0000375,  |
| Variables | anatomical entity1 (UBERON:0001062), anatomical entity2 (UBERON:0001062),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormallyDecreasedDistanceBetweenAnatomicalEntities.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedDistanceBetweenAnatomicalEntities.tsv) |

### Abnormally decreased efficacy of behavior
*Behavior occurs with a reduced efficacy, i.e. a decreased ability to produce its output. For example, male courtship behavior that is less attractive to females, or memory that results in a weaker aversive response to a stimulus associated with punishment.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedEfficacyOfBehavior.yaml |
| Name | abnormallyDecreasedEfficacyOfBehavior |
| Classes | PATO:0015003, PATO:0000460, NBO:0000313,  |
| Variables | behavior process (NBO:0000313),  |
| Contributors | [http://orcid.org/0000-0002-1373-1705](http://orcid.org/0000-0002-1373-1705),  |
| Examples |  |

### Abnormally decreased efficacy of protein localization in cellular component
*Abnormally decreased efficacy or output of any process in which a protein is transported to, or maintained in, a specific sub-cellular location.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedEfficacyOfProteinLocalizationInCellularComponent.yaml |
| Name | abnormallyDecreasedEfficacyOfProteinLocalizationInCellularComponent |
| Classes | PATO:0000460, PATO:0015003, GO:0008104, GO:0005575,  |
| Variables | cellular component (GO:0005575),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-4532-2703](https://orcid.org/0000-0002-4532-2703), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172),  |
| Examples | [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormallyDecreasedEfficacyOfProteinLocalizationInCellularComponent.tsv) |

### Abnormally decreased functionality of anatomical entity
*Decreased functionality of an anatomical entity or part, such as decreased functionality of the gall bladder.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedFunctionalityOfAnatomicalEntity.yaml |
| Name | abnormallyDecreasedFunctionalityOfAnatomicalEntity |
| Classes | PATO:0001624, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedFunctionalityOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedFunctionalityOfAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyDecreasedFunctionalityOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedFunctionalityOfAnatomicalEntity.tsv) |

### Abnormally decreased functionality of anatomical entity in location
*An impaired function of an anatomical entity or part, in a specific anatomical location, such as Beta-cell dysfunction in the pancreas.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedFunctionalityOfAnatomicalEntityInLocation.yaml |
| Name | abnormallyDecreasedFunctionalityOfAnatomicalEntityInLocation |
| Classes | PATO:0001624, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedFunctionalityOfAnatomicalEntityInLocation.tsv) |

### Abnormally decreased height of anatomical entity
*An abnormally short anatomical structure, such as HP:0004322 Short stature.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedHeightOfAnatomicalEntity.yaml |
| Name | abnormallyDecreasedHeightOfAnatomicalEntity |
| Classes | PATO:0000569, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedHeightOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedHeightOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedHeightOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedHeightOfAnatomicalEntity.tsv) |

### Abnormally decreased length of anatomical entity
*Anatomical entity is observed to be of decreased length. i.e., decreased length of tail*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedLengthOfAnatomicalEntity.yaml |
| Name | abnormallyDecreasedLengthOfAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000574,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedLengthOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedLengthOfAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyDecreasedLengthOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedLengthOfAnatomicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormallyDecreasedLengthOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedLengthOfAnatomicalEntity.tsv) |

### Abnormally decreased length of anatomical entity attached to location
*Anatomical entity is observed to be of decreased length while attached to another anatomical entity. This pattern is primary used for HPO contracture terms, such as HP_0001239 'Wrist flexion contracture'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedLengthOfAnatomicalEntityAttachedToLocation.yaml |
| Name | abnormallyDecreasedLengthOfAnatomicalEntityAttachedToLocation |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000574, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedLengthOfAnatomicalEntityAttachedToLocation.tsv) |

### Abnormally decreased length of anatomical entity in location
*Anatomical entity is observed to be of decreased length, such as decreased length of finger on the hand.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedLengthOfAnatomicalEntityInLocation.yaml |
| Name | abnormallyDecreasedLengthOfAnatomicalEntityInLocation |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000574, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedLengthOfAnatomicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedLengthOfAnatomicalEntityInLocation.tsv) |

### Abnormally decreased level of chemical entity
**

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedLevelOfChemicalEntity.yaml |
| Name | abnormallyDecreasedLevelOfChemicalEntity |
| Classes | PATO:0001997, PATO:0000460, CHEBI:24431,  |
| Variables | chemical entity (CHEBI:24431),  |
| Contributors | [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedLevelOfChemicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedLevelOfChemicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyDecreasedLevelOfChemicalEntity.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyDecreasedLevelOfChemicalEntity.tsv) |

### Abnormally decreased level of chemical entity in location
**

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedLevelOfChemicalEntityInLocation.yaml |
| Name | abnormallyDecreasedLevelOfChemicalEntityInLocation |
| Classes | PATO:0001997, PATO:0000460, CHEBI:24431, BFO:0000004,  |
| Variables | chemical entity (CHEBI:24431), independent continuant (BFO:0000004),  |
| Contributors | [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedLevelOfChemicalEntityInLocation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedLevelOfChemicalEntityInLocation.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyDecreasedLevelOfChemicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedLevelOfChemicalEntityInLocation.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyDecreasedLevelOfChemicalEntityInLocation.tsv) |

### Abnormally decreased level of chemical entity with role
*An abnormally decreased level of a chemical with a specific role, such as a metabolite or hormone like androgen, for example, 'decreased androgen level'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedLevelOfChemicalEntityWithRole.yaml |
| Name | abnormallyDecreasedLevelOfChemicalEntityWithRole |
| Classes | PATO:0001997, PATO:0000460, CHEBI:24431, CHEBI:50906,  |
| Variables | role (CHEBI:50906),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples |  |

### Abnormally decreased level of chemical entity with role in location
*An abnormally decreased level of a chemical with a specific role, such as a metabolite or hormone like androgen, in a location, such as blood. For example, HP_0030349 'Decreased circulating androgen level'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedLevelOfChemicalEntityWithRoleInLocation.yaml |
| Name | abnormallyDecreasedLevelOfChemicalEntityWithRoleInLocation |
| Classes | PATO:0001997, PATO:0000460, CHEBI:24431, CHEBI:50906, BFO:0000004,  |
| Variables | role (CHEBI:50906), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedLevelOfChemicalEntityWithRoleInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedLevelOfChemicalEntityWithRoleInLocation.tsv) |

### Abnormally decreased mass density of anatomical entity
*The mass density (its mass per unit volume) of anatomical entity is lower than normal, such as HP_0004349 Reduced bone mineral density.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedMassDensityOfAnatomicalEntity |
| Name | abnormallyDecreasedMassDensityOfAnatomicalEntity |
| Classes | PATO:0001790, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedMassDensityOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedMassDensityOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedMassDensityOfAnatomicalEntity.tsv) |

### Abnormally decreased mass of anatomical entity
*The mass (the amount of matter or substance that makes up an object) of anatomical entity is lower than normal, such as HP_0003199 Decreased muscle mass. Note, mass density (mass per unit volume) is different than overall mass.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedMassOfAnatomicalEntity.yaml |
| Name | abnormallyDecreasedMassOfAnatomicalEntity |
| Classes | PATO:0001562, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedMassOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedMassOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedMassOfAnatomicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormallyDecreasedMassOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedMassOfAnatomicalEntity.tsv) |

### Abnormally decreased mobility of anatomical entity
*An abnormally decreased or reduced ability to move an anatomical entity. Example: MP:0030863 decreased joint mobility.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedMobilityOfAnatomicalEntity.yaml |
| Name | abnormallyDecreasedMobilityOfAnatomicalEntity |
| Classes | PATO:0002283, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedMobilityOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedMobilityOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedMobilityOfAnatomicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormallyDecreasedMobilityOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedMobilityOfAnatomicalEntity.tsv) |

### Abnormally decreased motility of cellular component in location
*Decreased ability to move a cellular component in an anatomical entity/location.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedMotilityOfCellularComponentInLocation.yaml |
| Name | abnormallyDecreasedMotilityOfCellularComponentInLocation |
| Classes | PATO:0000911, PATO:0000460, GO:0005575, BFO:0000004, GO:0006928,  |
| Variables | cellular component (GO:0005575), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples |  |

### Abnormally decreased number of anatomical entity
*A decreased number of an anatomical entity, such a decreased number of teeth.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedNumberOfAnatomicalEntity.yaml |
| Name | abnormallyDecreasedNumberOfAnatomicalEntity |
| Classes | PATO:0001997, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedNumberOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedNumberOfAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyDecreasedNumberOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedNumberOfAnatomicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormallyDecreasedNumberOfAnatomicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormallyDecreasedNumberOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedNumberOfAnatomicalEntity.tsv) |

### Abnormally decreased number of anatomical entity in location
*A decreased number of an anatomical entity in a location, such a decreased number of teeth in the mouth.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedNumberOfAnatomicalEntityInLocation.yaml |
| Name | abnormallyDecreasedNumberOfAnatomicalEntityInLocation |
| Classes | PATO:0001997, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedNumberOfAnatomicalEntityInLocation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedNumberOfAnatomicalEntityInLocation.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedNumberOfAnatomicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedNumberOfAnatomicalEntityInLocation.tsv) |

### Abnormally decreased number of cellular component
*A decreased number of a cellular component, such as HP:0040013 'Decreased mitochondrial number'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedNumberOfCellularComponent.yaml |
| Name | abnormallyDecreasedNumberOfCellularComponent |
| Classes | PATO:0001997, PATO:0000460, GO:0005575,  |
| Variables | cellular component (GO:0005575),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedNumberOfCellularComponent.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedNumberOfCellularComponent.tsv) [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormallyDecreasedNumberOfCellularComponent.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyDecreasedNumberOfCellularComponent.tsv) |

### Abnormally decreased occurrence of biological process
*Occurrence of a biological process that is abnormally low.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedOccurrenceOfBiologicalProcess.yaml |
| Name | abnormallyDecreasedOccurrenceOfBiologicalProcess |
| Classes | PATO:0002052, PATO:0000460, GO:0008150,  |
| Variables | biological_process (GO:0008150),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyDecreasedOccurrenceOfBiologicalProcess.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedOccurrenceOfBiologicalProcess.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormallyDecreasedOccurrenceOfBiologicalProcess.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedOccurrenceOfBiologicalProcess.tsv) [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormallyDecreasedOccurrenceOfBiologicalProcess.tsv) [fypo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/fypo/abnormallyDecreasedOccurrenceOfBiologicalProcess.tsv) |

### Abnormally decreased occurrence of biological process in location
*Occurrence of a biological process in some location that is abnormally low.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedOccurrenceOfBiologicalProcessInLocation.yaml |
| Name | abnormallyDecreasedOccurrenceOfBiologicalProcessInLocation |
| Classes | PATO:0002052, PATO:0000460, GO:0008150, BFO:0000004,  |
| Variables | biological process (GO:0008150), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779),  |
| Examples | [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedOccurrenceOfBiologicalProcessInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedOccurrenceOfBiologicalProcessInLocation.tsv) |

### Abnormally decreased pigmentation of anatomical entity
*Decreased pigmentation of an anatomical entity, such as decreased skin pigmentation.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedPigmentationOfAnatomicalEntity.yaml |
| Name | abnormallyDecreasedPigmentationOfAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0002251,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedPigmentationOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedPigmentationOfAnatomicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormallyDecreasedPigmentationOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedPigmentationOfAnatomicalEntity.tsv) |

### Abnormally decreased position of anatomical entity
*The postion or placement of an anatomical entity is lowered or decreased, such as MP_0000024 'lowered ear position' or HP_0000369 Low-set ears.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedPositionOfAnatomicalEntity.yaml |
| Name | abnormallyDecreasedPositionOfAnatomicalEntity |
| Classes | PATO:0001476, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedPositionOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedPositionOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedPositionOfAnatomicalEntity.tsv) |

### Abnormally decreased quality of biological process
*Process that appears in some (unspecified) way impaired or decreased (less frequent, less strong).*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedQualityOfBiologicalProcess.yaml |
| Name | abnormallyDecreasedQualityOfBiologicalProcess |
| Classes | PATO:0002302, PATO:0000460, GO:0008150,  |
| Variables | biological process (GO:0008150),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedQualityOfBiologicalProcess.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedQualityOfBiologicalProcess.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedQualityOfBiologicalProcess.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedQualityOfBiologicalProcess.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyDecreasedQualityOfBiologicalProcess.tsv) |

### Abnormally decreased quality of biological process in location
*Process in a location that appears in some (unspecified) way impaired or decreased (less frequent, less strong).*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedQualityOfBiologicalProcessInLocation.yaml |
| Name | abnormallyDecreasedQualityOfBiologicalProcessInLocation |
| Classes | PATO:0002302, PATO:0000460, GO:0008150, BFO:0000004,  |
| Variables | biological process (GO:0008150), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedQualityOfBiologicalProcessInLocation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedQualityOfBiologicalProcessInLocation.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedQualityOfBiologicalProcessInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedQualityOfBiologicalProcessInLocation.tsv) |

### Abnormally decreased rate of behavior
*Behavior occurs with a lower frequency (less often) than usual (per unit of time).*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedRateOfBehavior.yaml |
| Name | abnormallyDecreasedRateOfBehavior |
| Classes | PATO:0000911, PATO:0000460, NBO:0000313,  |
| Variables | behavior process (NBO:0000313),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedRateOfBehavior.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedRateOfBehavior.tsv) |

### Abnormally decreased rate of biological process
*Decreased frequency of a biological process occuring (per some unit of time).*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedRateOfBiologicalProcess.yaml |
| Name | abnormallyDecreasedRateOfBiologicalProcess |
| Classes | PATO:0000911, PATO:0000460, GO:0008150,  |
| Variables | biological_process (GO:0008150),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedRateOfBiologicalProcess.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedRateOfBiologicalProcess.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyDecreasedRateOfBiologicalProcess.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedRateOfBiologicalProcess.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormallyDecreasedRateOfBiologicalProcess.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedRateOfBiologicalProcess.tsv) [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormallyDecreasedRateOfBiologicalProcess.tsv) [fypo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/fypo/abnormallyDecreasedRateOfBiologicalProcess.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyDecreasedRateOfBiologicalProcess.tsv) |

### Abnormally decreased rate of biological process in location
*Decreased frequency of a biological process occuring (per some unit of time) in a location, such as HP_0003469 Peripheral dysmyelination.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedRateOfBiologicalProcessInLocation.yaml |
| Name | abnormallyDecreasedRateOfBiologicalProcessInLocation |
| Classes | PATO:0000911, PATO:0000460, GO:0008150, BFO:0000004,  |
| Variables | biological_process (GO:0008150), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedRateOfBiologicalProcessInLocation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedRateOfBiologicalProcessInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedRateOfBiologicalProcessInLocation.tsv) |

### Abnormally decreased rate of molecular function
*Decreased or reduced functionality of a molecular function, which is a process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities, such as binding, catalysis, enzyme activities (like hydrolases, ligases), etc. Example: HP_0002932 'Aldehyde oxidase deficiency'*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedRateOfMolecularFunction.yaml |
| Name | abnormallyDecreasedRateOfMolecularFunction |
| Classes | PATO:0000911, PATO:0000460, GO:0003674,  |
| Variables | molecular function (GO:0003674),  |
| Contributors | [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedRateOfMolecularFunction.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedRateOfMolecularFunction.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyDecreasedRateOfMolecularFunction.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedRateOfMolecularFunction.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedRateOfMolecularFunction.tsv) [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormallyDecreasedRateOfMolecularFunction.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyDecreasedRateOfMolecularFunction.tsv) |

### Abnormally decreased resistance of whole organism to chemical entity
*A phenotype in which an organism shows decreased resistance to a chemical, for example 4-aminosalicylic acid. NOTE: There is a more general pattern (abnormallyDecreasedResistanceOfWholeOrganismToEntity), so this one should probably be obsoleted.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedResistanceOfWholeOrganismToChemicalEntity.yaml |
| Name | abnormallyDecreasedResistanceOfWholeOrganismToChemicalEntity.yaml |
| Classes | PATO:0001651, PATO:0000460, CARO:0010004, CHEBI:24431,  |
| Variables | chemical entity (CHEBI:24431),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-7487-610X](https://orcid.org/0000-0001-7487-610X), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015),  |
| Examples | [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyDecreasedResistanceOfWholeOrganismToChemicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormallyDecreasedResistanceOfWholeOrganismToChemicalEntity.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyDecreasedResistanceOfWholeOrganismToChemicalEntity.tsv) |

### Abnormally decreased resistance of whole organism to entity
*A phenotype in which an organism shows decreased resistance to a something, like radiation.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedResistanceOfWholeOrganismToEntity.yaml |
| Name | abnormallyDecreasedResistanceOfWholeOrganismToEntity.yaml |
| Classes | PATO:0001651, PATO:0000460, CARO:0010004, BFO:0000001,  |
| Variables | entity (BFO:0000001),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyDecreasedResistanceOfWholeOrganismToEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormallyDecreasedResistanceOfWholeOrganismToEntity.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyDecreasedResistanceOfWholeOrganismToEntity.tsv) |

### Abnormally decreased size of anatomical entity
*Abnormally small anatomical entity, e.g. MP:0020533 'decreased pons size'*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedSizeOfAnatomicalEntity.yaml |
| Name | abnormallyDecreasedSizeOfAnatomicalEntity |
| Classes | PATO:0000587, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedSizeOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedSizeOfAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyDecreasedSizeOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedSizeOfAnatomicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormallyDecreasedSizeOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedSizeOfAnatomicalEntity.tsv) |

### Abnormally decreased size of anatomical entity in location
*Abnormally small anatomical entity in a location, e.g. and abnormally small finger on the right hand.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedSizeOfAnatomicalEntityInLocation.yaml |
| Name | abnormallyDecreasedSizeOfAnatomicalEntityInLocation |
| Classes | PATO:0000587, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedSizeOfAnatomicalEntityInLocation.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedSizeOfAnatomicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedSizeOfAnatomicalEntityInLocation.tsv) |

### Abnormally decreased size of cellular component
*Abnormally small cellular component, e.g. decreased contractile vacuole size'*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedSizeOfCellularComponent.yaml |
| Name | abnormallyDecreasedSizeOfCellularComponent |
| Classes | PATO:0000587, PATO:0000460, GO:0005575,  |
| Variables | cellular component (GO:0005575),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedSizeOfCellularComponent.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyDecreasedSizeOfCellularComponent.tsv) [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormallyDecreasedSizeOfCellularComponent.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyDecreasedSizeOfCellularComponent.tsv) |

### Abnormally decreased speed of anatomical entity
*Decreased speed of an antomical entity. i.e., decreased speed of whole organism*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedSpeedOfAnatomicalEntity.yaml |
| Name | abnormallyDecreasedSpeedOfAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000304,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormallyDecreasedSpeedOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedSpeedOfAnatomicalEntity.tsv) |

### Abnormally decreased stability of anatomical entity
*An abnormally decreased or impaired ability of an anatomical entity to to retain a particular structure or homeostatic set of structures. For example, abnormal spore stability.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedStabilityOfAnatomicalEntity.yaml |
| Name | abnormallyDecreasedStabilityOfAnatomicalEntity |
| Classes | PATO:0015028, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-4532-2703](https://orcid.org/0000-0002-4532-2703),  |
| Examples |  |

### Abnormally decreased strength of anatomical entity
*Weakness or decreased ability to exert power of an anatomical entity, such as HP_0001324 Muscle weakness.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedStrengthOfAnatomicalEntity.yaml |
| Name | abnormallyDecreasedStrengthOfAnatomicalEntity |
| Classes | PATO:0001779, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedStrengthOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedStrengthOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedStrengthOfAnatomicalEntity.tsv) |

### Abnormally decreased thickness of anatomical entity
*An abnormally thinner anatomical entity, like HP:0100689 Decreased corneal thickness.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedThicknessOfAnatomicalEntity.yaml |
| Name | abnormallyDecreasedThicknessOfAnatomicalEntity |
| Classes | PATO:0000592, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedThicknessOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedThicknessOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedThicknessOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedThicknessOfAnatomicalEntity.tsv) |

### Abnormally decreased tonicity of anatomical entity
*A decrease in the normal presence of tone or tension (the resistance to passive stretch during resting state) in an anatomical entity, usually a a muscle or organ, such as HP_0001252 Muscular hypotonia or MP_0003089 'decreased skin tensile strength'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedStrengthOfAnatomicalEntity.yaml |
| Name | abnormallyDecreasedTonicityOfAnatomicalEntity |
| Classes | PATO:0001619, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedTonicityOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedTonicityOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedTonicityOfAnatomicalEntity.tsv) |

### Abnormally decreased volume of anatomical entity
*Decreased volume of an anatomical entity, e.g. HP:0012695 Decreased thalamic volume.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedVolumeOfAnatomicalEntity.yaml |
| Name | abnormallyDecreasedVolumeOfAnatomicalEntity |
| Classes | PATO:0000596, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedVolumeOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedVolumeOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedVolumeOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedVolumeOfAnatomicalEntity.tsv) |

### Abnormally decreased weight of anatomical entity
*Decreased mass of an anatomical entity, e.g. decreased mass of the whole organism. NOTE: We are using decreased mass (PATO:0001562), not weight, to model this phenotype, see also https://github.com/obophenotype/bio-attribute-ontology/issues/39*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedWeightOfAnatomicalEntity.yaml |
| Name | abnormallyDecreasedWeightOfAnatomicalEntity |
| Classes | PATO:0001562, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedWeightOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedWeightOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedWeightOfAnatomicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormallyDecreasedWeightOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedWeightOfAnatomicalEntity.tsv) |

### Abnormally decreased width of anatomical entity
*Decrease in the width of an anatomical entity. i.e., decreased width, skinny, tail*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedWidthOfAnatomicalEntity.yaml |
| Name | abnormallyDecreasedWidthOfAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000599,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDecreasedWidthOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDecreasedWidthOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedWidthOfAnatomicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormallyDecreasedWidthOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedWidthOfAnatomicalEntity.tsv) |

### Abnormally decreased width of anatomical entity in location
*Abnormal decrease in the width of an anatomical entity, e.g. decreased width of the tail*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedWidthOfAnatomicalEntityInLocation.yaml |
| Name | abnormallyDecreasedWidthOfAnatomicalEntityInLocation |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000599, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDecreasedWidthOfAnatomicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDecreasedWidthOfAnatomicalEntityInLocation.tsv) |

### Abnormally delayed biological process
**

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDelayedBiologicalProcess.yaml |
| Name | abnormallyDelayedBiologicalProcess |
| Classes | PATO:0000502, PATO:0000460, GO:0008150,  |
| Variables | biological process (GO:0008150),  |
| Contributors | [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDelayedBiologicalProcess.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDelayedBiologicalProcess.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyDelayedBiologicalProcess.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDelayedBiologicalProcess.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDelayedBiologicalProcess.tsv) [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormallyDelayedBiologicalProcess.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyDelayedBiologicalProcess.tsv) |

### Abnormally delayed biological process in location
*Occurrence of a biological process in some location that is abnormally delayed.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDelayedBiologicalProcessInLocation.yaml |
| Name | abnormallyDelayedBiologicalProcessInLocation |
| Classes | PATO:0000502, PATO:0000460, GO:0008150, BFO:0000004,  |
| Variables | biological process (GO:0008150), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-4532-2703](https://orcid.org/0000-0002-4532-2703), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDelayedBiologicalProcessInLocation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDelayedBiologicalProcessInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDelayedBiologicalProcessInLocation.tsv) |

### Abnormally detached anatomical entities
*A partial or complete loss of connection between anatomical entities. For example, MP_0006023 detached Reissner membrane or MP_0003099 detached retina.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDetachedAnatomicalEntities.yaml |
| Name | abnormallyDetachedAnatomicalEntities |
| Classes | PATO:0001453, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062), anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDetachedAnatomicalEntities.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDetachedAnatomicalEntities.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDetachedAnatomicalEntities.tsv) |

### Abnormally dilated anatomical entity
*An abnormally dilated anatomical entity, for example, an abnormally dilated cardiac ventricle.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDilatedAnatomicalEntity.yaml |
| Name | abnormallyDilatedAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0001571,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDilatedAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDilatedAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDilatedAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDilatedAnatomicalEntity.tsv) |

### Abnormally duplicated anatomical entity
*An anatomical entity that was abnormally duplicated, such as a duplicated digit 1.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDuplicatedAnatomicalEntity.yaml |
| Name | abnormallyDuplicatedAnatomicalEntity |
| Classes | PATO:0001473, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyDuplicatedAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDuplicatedAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDuplicatedAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDuplicatedAnatomicalEntity.tsv) |

### Abnormally duplicated anatomical entity in location
*An anatomical entity that was abnormally duplicated in a location, such as a duplicated digit 1 on the right hand, or HP:0006176 Two carpal ossification centers present at birth..*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDuplicatedAnatomicalEntityInLocation.yaml |
| Name | abnormallyDuplicatedAnatomicalEntityInLocation |
| Classes | PATO:0001473, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyDuplicatedAnatomicalEntityInLocation.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyDuplicatedAnatomicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyDuplicatedAnatomicalEntityInLocation.tsv) |

### Abnormally everted anatomical entity
*An abnormal configuration of an anatomical entity, such that it is turned outward in placement (ie the opposite of inverted). Such as HP_0000232 Everted lower lip vermilion*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyEvertedAnatomicalEntity.yaml |
| Name | abnormallyEvertedAnatomicalEntity |
| Classes | PATO:0001597, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyEvertedAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyEvertedAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyEvertedAnatomicalEntity.tsv) |

### Abnormally fused anatomical entities
*An anatomical entity that is abnormally fused with another anatomical entity.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyFusedAnatomicalEntities.yaml |
| Name | abnormallyFusedAnatomicalEntities |
| Classes | PATO:0000642, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062), anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyFusedAnatomicalEntities.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyFusedAnatomicalEntities.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyFusedAnatomicalEntities.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyFusedAnatomicalEntities.tsv) |

### Abnormally fused anatomical entities in location
*An anatomical entity in a particular location that is abnormally fused with another anatomical entity in a particular location. Before using this pattern make sure abnormallyFusedAnatomicalEntities is not applicable.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyFusedAnatomicalEntitiesInLocation.yaml |
| Name | abnormallyFusedAnatomicalEntitiesInLocation |
| Classes | PATO:0000642, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), anatomical entity (UBERON:0001062), independent continuant (BFO:0000004), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyFusedAnatomicalEntitiesInLocation.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyFusedAnatomicalEntitiesInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyFusedAnatomicalEntitiesInLocation.tsv) |

### Abnormally immobile anatomical entity
*An abnormality of the complete lack of the ability to move (immobility) an anatomical entity, including cells.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyImmobileAnatomicalEntity.yaml |
| Name | abnormallyImmobileAnatomicalEntity |
| Classes | PATO:0000300, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormallyImmobileAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyImmobileAnatomicalEntity.tsv) |

### Abnormally incomplete closure of anatomical entity
**

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns/abnormallyIncompleteClosureOfAnatomicalEntity.yaml |
| Name | abnormallyIncompleteClosureOfAnatomicalEntity |
| Classes | PATO:0000609, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncompleteClosureOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncompleteClosureOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncompleteClosureOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncompleteClosureOfAnatomicalEntity.tsv) |

### Abnormally increased coiling of anatomical entity
*An anatomical entity (or whole organism) that exhibits abnormally increased coiling, or wound into a spiral or sequence of rings, like an abnormally increased coiling of tail.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedCoilingOfAnatomicalEntity.yaml |
| Name | abnormallyIncreasedCoilingOfAnatomicalEntity |
| Classes | PATO:0001795, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples |  |

### Abnormally increased distance between anatomical entities
*The distance between two anatomical entites has increased. For example the distance between eyes.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedDistanceBetweenAnatomicalEntities.yaml |
| Name | abnormallyIncreasedDistanceBetweenAnatomicalEntities |
| Classes | PATO:0000460, UBERON:0001062, UBERON:0001062, PATO:0000374,  |
| Variables | entity1 (UBERON:0001062), entity2 (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormallyIncreasedDistanceBetweenAnatomicalEntities.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedDistanceBetweenAnatomicalEntities.tsv) |

### Abnormally increased efficacy of behavior
*Behavior occurs with a higher efficacy, i.e. an increased ability to produce its output. For example, male courtship behavior that is more attractive to females, or memory that results in a stronger aversive response to a stimulus associated with punishment.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedEfficacyOfBehavior.yaml |
| Name | abnormallyIncreasedEfficacyOfBehavior |
| Classes | PATO:0015004, PATO:0000460, NBO:0000313,  |
| Variables | behavior process (NBO:0000313),  |
| Contributors | [http://orcid.org/0000-0002-1373-1705](http://orcid.org/0000-0002-1373-1705),  |
| Examples |  |

### Abnormally increased efficacy of protein localization in cellular component
*Abnormally increased efficacy or output of any process in which a protein is transported to, or maintained in, a specific sub-cellular location.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedEfficacyOfProteinLocalizationInCellularComponent.yaml |
| Name | abnormallyIncreasedEfficacyOfProteinLocalizationInCellularComponent |
| Classes | PATO:0000460, PATO:0015004, GO:0008104, GO:0005575,  |
| Variables | cellular component (GO:0005575),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-4532-2703](https://orcid.org/0000-0002-4532-2703), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172),  |
| Examples | [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormallyIncreasedEfficacyOfProteinLocalizationInCellularComponent.tsv) |

### Abnormally increased functionality of anatomical entity in location
*Overactivity or hyperfunctionality of an organ or anatomical entity in a specific location.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedFunctionalityOfAnatomicalEntityInLocation.yaml |
| Name | abnormallyIncreasedFunctionalityOfAnatomicalEntityInLocation |
| Classes | PATO:0001625, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples |  |

### Abnormally increased height of anatomical entity
*An abnormally tall anatomical structure, such as HP_0000348 High forehead.'*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedHeightOfAnatomicalEntity.yaml |
| Name | abnormallyIncreasedHeightOfAnatomicalEntity |
| Classes | PATO:0000570, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedHeightOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedHeightOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncreasedHeightOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedHeightOfAnatomicalEntity.tsv) |

### Abnormally increased height of anatomical entity in location
*An abnormally tall anatomical structure in a location.'*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedHeightOfAnatomicalEntityInLocation.yaml |
| Name | abnormallyIncreasedHeightOfAnatomicalEntityInLocation |
| Classes | PATO:0000570, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedHeightOfAnatomicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedHeightOfAnatomicalEntityInLocation.tsv) |

### Abnormally increased length of anatomical entity
*Increased length of an antomical entity. i.e., increased length of tail*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedLengthOfAnatomicalEntity.yaml |
| Name | abnormallyIncreasedLengthOfAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000573,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedLengthOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedLengthOfAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyIncreasedLengthOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncreasedLengthOfAnatomicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormallyIncreasedLengthOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedLengthOfAnatomicalEntity.tsv) |

### Abnormally increased length of anatomical entity in location
*Increased length/abnormally long in a particular anatomical entity. Example: HP_0012743 'Abdominal obesity'*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedLengthOfAnatomicalEntityInLocation.yaml |
| Name | abnormallyIncreasedLengthOfAnatomicalEntityInLocation |
| Classes | PATO:0000573, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedLengthOfAnatomicalEntityInLocation.tsv) |

### Abnormally increased level of chemical entity
**

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedLevelOfChemicalEntity.yaml |
| Name | abnormallyIncreasedLevelOfChemicalEntity |
| Classes | PATO:0000470, PATO:0000460, CHEBI:24431,  |
| Variables | chemical entity (CHEBI:24431),  |
| Contributors | [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedLevelOfChemicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedLevelOfChemicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyIncreasedLevelOfChemicalEntity.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyIncreasedLevelOfChemicalEntity.tsv) |

### Abnormally increased level of chemical entity in location
*An abnormal increase of a chemical entity in a lcoation. Example 'Increased CSF lactate', i.e. increased lactate in cerebrospinal fluid (HP_0002490).*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedLevelOfChemicalEntityInLocation.yaml |
| Name | abnormallyIncreasedLevelOfChemicalEntityInLocation |
| Classes | PATO:0000470, PATO:0000460, CHEBI:24431, BFO:0000004,  |
| Variables | chemical entity (CHEBI:24431), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedLevelOfChemicalEntityInLocation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedLevelOfChemicalEntityInLocation.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyIncreasedLevelOfChemicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedLevelOfChemicalEntityInLocation.tsv) [mgpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mgpo/abnormallyIncreasedLevelOfChemicalEntityInLocation.tsv) |

### Abnormally increased level of chemical entity with role
*An abnormally increased level of a chemical with a specific role, e.g. metabolite. For example, increased biopterin level*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedLevelOfChemicalEntityWithRole.yaml |
| Name | abnormallyIncreasedLevelOfChemicalEntityWithRole |
| Classes | PATO:0000470, PATO:0000460, CHEBI:24431, CHEBI:50906,  |
| Variables | role (CHEBI:50906),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples |  |

### Abnormally increased level of chemical entity with role in location
*An abnormally increased level of a chemical with a specific role, such as a metabolite or hormone like androgen, in a location, such as blood. For example, HP_0030348 'Increased circulating androgen level'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedLevelOfChemicalEntityWithRoleInLocation.yaml |
| Name | abnormallyIncreasedLevelOfChemicalEntityWithRoleInLocation |
| Classes | PATO:0000470, PATO:0000460, CHEBI:24431, CHEBI:50906, BFO:0000004,  |
| Variables | role (CHEBI:50906), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedLevelOfChemicalEntityWithRoleInLocation.tsv) |

### Abnormally increased mass density of anatomical entity
*Abnormally increased mass density (mass per unit volume) of an anatomical entity, for example "Dense calvaria". This pattern is not to be used for count per area (e.g. cell count) phenotypes.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedMassDensityOfAnatomicalEntity.yaml |
| Name | abnormallyIncreasedMassDensityOfAnatomicalEntity.yaml |
| Classes | PATO:0001788, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedMassDensityOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedMassDensityOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedMassDensityOfAnatomicalEntity.tsv) |

### Abnormally increased mass density of anatomical entity in location
*Abnormally increased mass density (mass per unit volume) of an anatomical entity in a location. For example, it can be a bone element at a location, such as the "Increased density of long bone diaphyses". This pattern is not to be used for count per area (e.g. cell count) phenotypes.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedMassDensityOfAnatomicalEntityInLocation.yaml |
| Name | abnormallyIncreasedMassDensityOfAnatomicalEntityInLocation |
| Classes | PATO:0001788, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical_entity (UBERON:0001062), independent_continuant (BFO:0000004),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723),  |
| Examples |  |

### Abnormally increased mobility of anatomical entity
*An increased or enhanced ability to move an anatomical entity, including cells. Example: HP_0003318 'Cervical spine hypermobility' .*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedMobilityOfAnatomicalEntity.yaml |
| Name | abnormallyIncreasedMobilityOfAnatomicalEntity |
| Classes | PATO:0002282, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedMobilityOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncreasedMobilityOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedMobilityOfAnatomicalEntity.tsv) |

### Abnormally increased motility of cellular component in location
*Increased ability to move a cellular component in an anatomical entity/location.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedMotilityOfCellularComponentInLocation.yaml |
| Name | abnormallyIncreasedMotilityOfCellularComponentInLocation |
| Classes | PATO:0000912, PATO:0000460, GO:0005575, BFO:0000004, GO:0006928,  |
| Variables | cellular component (GO:0005575), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples |  |

### Abnormally increased number of anatomical entity
*An increased number of an anatomical entity, such an increased number of teeth.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedNumberOfAnatomicalEntity.yaml |
| Name | abnormallyIncreasedNumberOfAnatomicalEntity |
| Classes | PATO:0000470, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedNumberOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedNumberOfAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyIncreasedNumberOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncreasedNumberOfAnatomicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormallyIncreasedNumberOfAnatomicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormallyIncreasedNumberOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedNumberOfAnatomicalEntity.tsv) |

### Abnormally increased number of anatomical entity in location
*An increased number of an anatomical entity in a location, such a increased number of teeth in the mouth.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedNumberOfAnatomicalEntityInLocation.yaml |
| Name | abnormallyIncreasedNumberOfAnatomicalEntityInLocation |
| Classes | PATO:0000470, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedNumberOfAnatomicalEntityInLocation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedNumberOfAnatomicalEntityInLocation.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncreasedNumberOfAnatomicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedNumberOfAnatomicalEntityInLocation.tsv) |

### Abnormally increased number of cellular component
*An increased number of a cellular component.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedNumberOfCellularComponent.yaml |
| Name | abnormallyIncreasedNumberOfCellularComponent |
| Classes | PATO:0000470, PATO:0000460, GO:0005575,  |
| Variables | cellular component (GO:0005575),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedNumberOfCellularComponent.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedNumberOfCellularComponent.tsv) [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormallyIncreasedNumberOfCellularComponent.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyIncreasedNumberOfCellularComponent.tsv) |

### Abnormally increased occurrence of biological process
*Occurrence of a biological process that is abnormally high.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedOccurrenceOfBiologicalProcess.yaml |
| Name | abnormallyIncreasedOccurrenceOfBiologicalProcess |
| Classes | PATO:0002051, PATO:0000460, GO:0008150,  |
| Variables | biological_process (GO:0008150),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyIncreasedOccurrenceOfBiologicalProcess.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncreasedOccurrenceOfBiologicalProcess.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormallyIncreasedOccurrenceOfBiologicalProcess.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedOccurrenceOfBiologicalProcess.tsv) [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormallyIncreasedOccurrenceOfBiologicalProcess.tsv) [fypo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/fypo/abnormallyIncreasedOccurrenceOfBiologicalProcess.tsv) |

### Abnormally increased occurrence of biological process in location
*Occurrence of a biological process in some location that is abnormally high.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedOccurrenceOfBiologicalProcessInLocation.yaml |
| Name | abnormallyIncreasedOccurrenceOfBiologicalProcessInLocation |
| Classes | PATO:0002051, PATO:0000460, GO:0008150, BFO:0000004,  |
| Variables | biological process (GO:0008150), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncreasedOccurrenceOfBiologicalProcessInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedOccurrenceOfBiologicalProcessInLocation.tsv) |

### Abnormally increased pigmentation of anatomical entity
*Increased pigmentation of an anatomical entity, such as increased skin pigmentation.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedPigmentationOfAnatomicalEntity.yaml |
| Name | abnormallyIncreasedPigmentationOfAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0002250,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedPigmentationOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncreasedPigmentationOfAnatomicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormallyIncreasedPigmentationOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedPigmentationOfAnatomicalEntity.tsv) |

### Abnormally increased quality of biological process
*Process that appears in some (unspecified) way strengthened or increased (more frequent, more strong).*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedQualityOfBiologicalProcess.yaml |
| Name | abnormallyIncreasedQualityOfBiologicalProcess |
| Classes | PATO:0002304, PATO:0000460, GO:0008150,  |
| Variables | biological process (GO:0008150),  |
| Contributors | [0000-0001-7487-610X](https://orcid.org/0000-0001-7487-610X),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedQualityOfBiologicalProcess.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedQualityOfBiologicalProcess.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyIncreasedQualityOfBiologicalProcess.tsv) |

### Abnormally increased quality of biological process in location
*Process in a location that appears in some (unspecified) way strengthened or increased (more frequent, more strong).*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedQualityOfBiologicalProcessInLocation.yaml |
| Name | abnormallyIncreasedQualityOfBiologicalProcessInLocation |
| Classes | PATO:0002304, PATO:0000460, GO:0008150, BFO:0000004,  |
| Variables | biological process (GO:0008150), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-7487-610X](https://orcid.org/0000-0001-7487-610X),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedQualityOfBiologicalProcessInLocation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedQualityOfBiologicalProcessInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedQualityOfBiologicalProcessInLocation.tsv) |

### Abnormally increased rate of behavior
*Behavior occurs with a higher frequency (more often) than usual (per unit of time)*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedRateOfBehavior.yaml |
| Name | abnormallyIncreasedRateOfBehavior |
| Classes | PATO:0000912, PATO:0000460, NBO:0000313,  |
| Variables | behavior process (NBO:0000313),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedRateOfBehavior.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedRateOfBehavior.tsv) |

### Abnormally increased rate of biological process
*Abnormally increased frequency of a biological process occuring (per some unit of time).*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedRateOfBiologicalProcess.yaml |
| Name | abnormallyIncreasedRateOfBiologicalProcess |
| Classes | PATO:0000912, PATO:0000460, GO:0008150,  |
| Variables | biological_process (GO:0008150),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedRateOfBiologicalProcess.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedRateOfBiologicalProcess.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyIncreasedRateOfBiologicalProcess.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncreasedRateOfBiologicalProcess.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormallyIncreasedRateOfBiologicalProcess.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedRateOfBiologicalProcess.tsv) [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormallyIncreasedRateOfBiologicalProcess.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyIncreasedRateOfBiologicalProcess.tsv) |

### Abnormally increased rate of biological process in location
*Abnormally increased frequency of a biological process occuring (per some unit of time) in some location, such as increased apoptosis in a tissue.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedRateOfBiologicalProcessInLocation.yaml |
| Name | abnormallyIncreasedRateOfBiologicalProcessInLocation |
| Classes | PATO:0000912, PATO:0000460, GO:0008150, BFO:0000004,  |
| Variables | biological process (GO:0008150), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedRateOfBiologicalProcessInLocation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedRateOfBiologicalProcessInLocation.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncreasedRateOfBiologicalProcessInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedRateOfBiologicalProcessInLocation.tsv) |

### Abnormally increased rate of molecular function
*Increased functionality of a molecular process, like 'growth hormone secretion' or 'ketone body biosynthetic process'. For example: HP_0000845 'Growth hormone excess' and HP_0001946 Ketosis.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedRateOfMolecularFunction.yaml |
| Name | abnormallyIncreasedRateOfMolecularFunction |
| Classes | PATO:0000912, PATO:0000460, GO:0003674,  |
| Variables | molecular function (GO:0003674),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedRateOfMolecularFunction.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyIncreasedRateOfMolecularFunction.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncreasedRateOfMolecularFunction.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedRateOfMolecularFunction.tsv) [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormallyIncreasedRateOfMolecularFunction.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyIncreasedRateOfMolecularFunction.tsv) |

### Abnormally increased resistance of whole organism to chemical entity
*A phenotype in which an organism shows increased resistance to a chemical, for example 4-aminosalicylic acid. NOTE: There is a more general pattern (abnormallyIncreasedResistanceOfWholeOrganismToEntity), so this one should probably be obsoleted.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedResistanceOfWholeOrganismToChemicalEntity.yaml |
| Name | abnormallyIncreasedResistanceOfWholeOrganismToChemicalEntity.yaml |
| Classes | PATO:0001650, PATO:0000460, CARO:0010004, CHEBI:24431,  |
| Variables | chemical entity (CHEBI:24431),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0001-7487-610X](https://orcid.org/0000-0001-7487-610X),  |
| Examples | [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyIncreasedResistanceOfWholeOrganismToChemicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormallyIncreasedResistanceOfWholeOrganismToChemicalEntity.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyIncreasedResistanceOfWholeOrganismToChemicalEntity.tsv) |

### Abnormally increased resistance of whole organism to entity
*A phenotype in which an organism shows increased resistance to something, for example radition.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedResistanceOfWholeOrganismToEntity.yaml |
| Name | abnormallyIncreasedResistanceOfWholeOrganismToEntity.yaml |
| Classes | PATO:0001650, PATO:0000460, CARO:0010004, BFO:0000001,  |
| Variables | entity (BFO:0000001),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyIncreasedResistanceOfWholeOrganismToEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormallyIncreasedResistanceOfWholeOrganismToEntity.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyIncreasedResistanceOfWholeOrganismToEntity.tsv) |

### Abnormally increased size of anatomical entity
*A enlarged entity, like an abnormally large anatomical structure.	i.e. HP_0012081 'Enlarged cerebellum'*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedSizeOfAnatomicalEntity.yaml |
| Name | abnormallyIncreasedSizeOfAnatomicalEntity |
| Classes | PATO:0000586, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedSizeOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedSizeOfAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyIncreasedSizeOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncreasedSizeOfAnatomicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormallyIncreasedSizeOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedSizeOfAnatomicalEntity.tsv) |

### Abnormally increased size of anatomical entity in location
*A enlarged entity, like an abnormally large anatomical structure in a location, such as an enlarged glomerulus in the kidney.'*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedSizeOfAnatomicalEntityInLocation.yaml |
| Name | abnormallyIncreasedSizeOfAnatomicalEntityInLocation |
| Classes | PATO:0000586, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedSizeOfAnatomicalEntityInLocation.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncreasedSizeOfAnatomicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedSizeOfAnatomicalEntityInLocation.tsv) |

### Abnormally increased size of cellular component
*A enlarged cellular component, like increased phagolysosome size.'*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedSizeOfCellularComponent.yaml |
| Name | abnormallyIncreasedSizeOfCellularComponent |
| Classes | PATO:0000586, PATO:0000460, GO:0005575,  |
| Variables | cellular component (GO:0005575),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedSizeOfCellularComponent.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/abnormallyIncreasedSizeOfCellularComponent.tsv) [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormallyIncreasedSizeOfCellularComponent.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyIncreasedSizeOfCellularComponent.tsv) |

### Abnormally increased speed of anatomical entity
*Increased speed of an antomical entity. i.e., increased speed of whole organism*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedSpeedOfAnatomicalEntity.yaml |
| Name | abnormallyIncreasedSpeedOfAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000303,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormallyIncreasedSpeedOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedSpeedOfAnatomicalEntity.tsv) |

### Abnormally increased stability of anatomical entity
*An abnormally increased or impaired ability of an anatomical entity to to retain a particular structure or homeostatic set of structures. For example, abnormal spore stability.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedStabilityOfAnatomicalEntity.yaml |
| Name | abnormallyIncreasedStabilityOfAnatomicalEntity |
| Classes | PATO:0015027, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-4532-2703](https://orcid.org/0000-0002-4532-2703),  |
| Examples |  |

### Abnormally increased thickness of anatomical entity
*An abnormally thickened anatomical entity, like HP_0001072 Thickened skin.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedThicknessOfAnatomicalEntity.yaml |
| Name | abnormallyIncreasedThicknessOfAnatomicalEntity |
| Classes | PATO:0000591, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedThicknessOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedThicknessOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncreasedThicknessOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedThicknessOfAnatomicalEntity.tsv) |

### Abnormally increased thickness of anatomical entity in location
*An abnormally thickened anatomical entity in a location, like an abnormally thick skin of the hand.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedThicknessOfAnatomicalEntityInLocation.yaml |
| Name | abnormallyIncreasedThicknessOfAnatomicalEntityInLocation |
| Classes | PATO:0000591, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedThicknessOfAnatomicalEntityInLocation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedThicknessOfAnatomicalEntityInLocation.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncreasedThicknessOfAnatomicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedThicknessOfAnatomicalEntityInLocation.tsv) |

### Abnormally increased volume of anatomical entity
*Abnormally increased volume of anatomical entity, e.g. overexpanded pulmonary alveoli.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedVolumeOfAnatomicalEntity.yaml |
| Name | abnormallyIncreasedVolumeOfAnatomicalEntity |
| Classes | PATO:0000595, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172), [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedVolumeOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedVolumeOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncreasedVolumeOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedVolumeOfAnatomicalEntity.tsv) |

### Abnormally increased weight of anatomical entity
*Increased mass of an anatomical entity, e.g. increased mass of the whole organism. NOTE: We are using increased mass (PATO:0001563), not weight, to model this phenotype, see also https://github.com/obophenotype/bio-attribute-ontology/issues/39*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedWeightOfAnatomicalEntity.yaml |
| Name | abnormallyIncreasedWeightOfAnatomicalEntity |
| Classes | PATO:0001563, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedWeightOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedWeightOfAnatomicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/abnormallyIncreasedWeightOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedWeightOfAnatomicalEntity.tsv) |

### Abnormally increased width of anatomical entity
*Increased width of an antomical entity. i.e., wider tail.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedWidthOfAnatomicalEntity.yaml |
| Name | abnormallyIncreasedWidthOfAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000600,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0003-4148-4606](https://orcid.org/0000-0003-4148-4606),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyIncreasedWidthOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedWidthOfAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncreasedWidthOfAnatomicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/abnormallyIncreasedWidthOfAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedWidthOfAnatomicalEntity.tsv) |

### Abnormally increased width of anatomical entity in location
*An abnormal increase in the width of an anatomical entity in a location, e.g. an abnormally wide bone in the hand.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIncreasedWidthOfAnatomicalEntityInLocation.yaml |
| Name | abnormallyIncreasedWidthOfAnatomicalEntityInLocation |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000600, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyIncreasedWidthOfAnatomicalEntityInLocation.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyIncreasedWidthOfAnatomicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyIncreasedWidthOfAnatomicalEntityInLocation.tsv) |

### Abnormally inverted anatomical entity in location
*An abnormal configuration of an anatomical entity such that it is reversed in position, order, or condition in a particular location, e.g. an inverted joint in a limb.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyInvertedAnatomicalEntityInLocation.yaml |
| Name | abnormallyInvertedAnatomicalEntityInLocation |
| Classes | PATO:0000625, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyInvertedAnatomicalEntityInLocation.tsv) |

### Abnormally open anatomical entity
*Example: abnormal open anterior neural tube*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyOpenAnatomicalEntity.yaml |
| Name | abnormallyOpenAnatomicalEntity |
| Classes | PATO:0000610, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyOpenAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyOpenAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyOpenAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyOpenAnatomicalEntity.tsv) |

### Abnormally patchy pigmentation of anatomical entity
*Patchy pigmentation of an anatomical entity, such as patchy skin pigmentation.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyPatchyPigmentationOfAnatomicalEntity.yaml |
| Name | abnormallyPatchyPigmentationOfAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0065002,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples |  |

### Abnormally premature biological process
*A biological process which starts earlier than the natural start time or the reference process.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyPrematureBiologicalProcess.yaml |
| Name | abnormallyPrematureBiologicalProcess |
| Classes | PATO:0000694, PATO:0000460, GO:0008150,  |
| Variables | biological process (GO:0008150),  |
| Contributors | [0000-0001-7487-610X](https://orcid.org/0000-0001-7487-610X), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyPrematureBiologicalProcess.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyPrematureBiologicalProcess.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallyPrematureBiologicalProcess.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyPrematureBiologicalProcess.tsv) [ddpheno](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/ddpheno/abnormallyPrematureBiologicalProcess.tsv) [phipo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/phipo/abnormallyPrematureBiologicalProcess.tsv) |

### Abnormally premature biological process in location
*A biological process in a location that starts earlier than the natural start time or the reference process.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyPrematureBiologicalProcessInLocation.yaml |
| Name | abnormallyPrematureBiologicalProcessInLocation |
| Classes | PATO:0000694, PATO:0000460, GO:0008150, BFO:0000004,  |
| Variables | biological process (GO:0008150), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-4532-2703](https://orcid.org/0000-0002-4532-2703), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyPrematureBiologicalProcessInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyPrematureBiologicalProcessInLocation.tsv) |

### Abnormally prominent anatomical entity
*An anatomical entity that stands out or projects beyond the surface or line, such as a HP_0000395 'Prominent antihelix'*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyProminentAnatomicalEntity.yaml |
| Name | abnormallyProminentAnatomicalEntity |
| Classes | PATO:0001482, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyProminentAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyProminentAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyProminentAnatomicalEntity.tsv) |

### Abnormally protruding anatomical entity
*Use this phenotype pattern template, when an anatomical entity is protruding or projecting out or beyond a surface or boundary. When an anatomical entity is abnormally protruding or projecting from the body, use the more specific pattern of "exsertedAnatomicalEntity" instead of the pattern defined below.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyProtrudingAnatomicalEntity.yaml |
| Name | abnormallyProtrudingAnatomicalEntity |
| Classes | PATO:0001598, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723),  |
| Examples |  |

### Abnormally protruding anatomical entity in location
**

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyProtrudingAnatomicalEntityInLocation.yaml |
| Name | abnormallyProtrudingAnatomicalEntityInLocation |
| Classes | PATO:0000460, UBERON:0001062, PATO:0001646, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyProtrudingAnatomicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyProtrudingAnatomicalEntityInLocation.tsv) |

### Abnormally punctate anatomical entity
*Use this pattern for punctate morphological phenotypes where the surface of the anatomical entity exhibits dots, punctures, points or pits. Also use this pattern in cases of dotted or stippled anatomical entity surface phenotypes, e.g. epiphyseal stippling.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyPunctateAnatomicalEntity.yaml |
| Name | abnormallyPunctateAnatomicalEntity |
| Classes | PATO:0001512, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyPunctateAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyPunctateAnatomicalEntity.tsv) |

### Abnormally punctate anatomical entity in location
*Use this pattern for punctate morphological phenotypes where the surface of the anatomical entity in location exhibits dots, punctures, points or pits. Also use this pattern in cases of dotted or stippled anatomical entity surface in location phenotypes, e.g. stippling of the epiphyses of the 3rd toe.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyPunctateAnatomicalEntityInLocation.yaml |
| Name | abnormallyPunctateAnatomicalEntityInLocation |
| Classes | PATO:0001512, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical_entity (UBERON:0001062), independent_continuant (BFO:0000004),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyPunctateAnatomicalEntityInLocation.tsv) |

### Abnormally rotated anatomical entity
*An anatomical entity that is abnormally rotated or malrotated, such as HP_0004785 'Malrotation of colon'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyRotatedAnatomicalEntity.yaml |
| Name | abnormallyRotatedAnatomicalEntity |
| Classes | PATO:0001599, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abnormallyRotatedAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abnormallyRotatedAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallyRotatedAnatomicalEntity.tsv) |

### Abnormally segmented anatomical entity in location
*Anatomical entity that is abnormally segmented in a particular location, e.g. abnormally segmented bone in a limb.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallySegmentedAnatomicalEntityInLocation.yaml |
| Name | abnormallySegmentedAnatomicalEntityInLocation |
| Classes | PATO:0000460, UBERON:0001062, PATO:0002312, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/abnormallySegmentedAnatomicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/abnormallySegmentedAnatomicalEntityInLocation.tsv) |

### Abscess in location
*The presence of an abscess in an anatomical entity. HP_0025044 'Lung abscess'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abscessInLocation.yaml |
| Name | abscessInLocation |
| Classes | PATO:0000470, PATO:0000460, UBERON:0001062, MPATH:608,  |
| Variables | anatomical entity (UBERON:0001062), abscess (MPATH:608),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/abscessInLocation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/abscessInLocation.tsv) |

### Aplastic anatomical entity
*A congenital absence of an anatomical entity. For example, HP_0009238 'Aplasia of the 5th finger'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/aplasticAnatomicalEntity.yaml |
| Name | aplasticAnatomicalEntity |
| Classes | PATO:0001483, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/aplasticAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/aplasticAnatomicalEntity.tsv) |

### Aplastic hypoplastic anatomical entity
*An underdeveloped or absent anatomical entity. This pattern should be used in cases where the anatomical entity is small or missing, but the clinician or researcher is unable to definitively say if it is a case of aplasia or hypoplasia. Using the moree specific term is preferred.For example, HP_0006265 'Aplasia/Hypoplasia of fingers'*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/aplasticHypoplasticAnatomicalEntity.yaml |
| Name | aplasticHypoplasticAnatomicalEntity |
| Classes | PATO:0002290, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/aplasticHypoplasticAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/aplasticHypoplasticAnatomicalEntity.tsv) |

### Atretic anatomical entity
*Failure of an anatomcial entity to properly form. HP_0011984 'Atretic gallbladder'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/atreticAnatomicalEntity.yaml |
| Name | atreticAnatomicalEntity |
| Classes | PATO:0001819, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/atreticAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/atreticAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/atreticAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/atreticAnatomicalEntity.tsv) |

### Atrophied anatomical entity
*Atrophy (wasting) of an anatomical structure, such as HP_0410279 'Atrophic pituitary gland'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/atrophiedAnatomicalEntity.yaml |
| Name | atrophiedAnatomicalEntity |
| Classes | PATO:0001623, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/atrophiedAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/atrophiedAnatomicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/atrophiedAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/atrophiedAnatomicalEntity.tsv) |

### Bifurcated anatomical entity
*Branching of an anatomical entity into two branches. Example: HP_0010309 'Bifid sternum'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns/bifurcatedAnatomicalEntity.yaml |
| Name | bifurcatedAnatomicalEntity |
| Classes | PATO:0001784, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/bifurcatedAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/bifurcatedAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/bifurcatedAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/bifurcatedAnatomicalEntity.tsv) |

### Bifurcated anatomical entity in location
*Abnormal branching of an anatomical entity into two branches in a particular location, e.g. bifurcated blood vessel in a limb.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns/bifurcatedAnatomicalEntityInLocation.yaml |
| Name | bifurcatedAnatomicalEntityInLocation |
| Classes | PATO:0001784, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/bifurcatedAnatomicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/bifurcatedAnatomicalEntityInLocation.tsv) |

### Blistered anatomical entity
*The presence of blisters on an anatomical entity, such as blisters on the skin.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/blisteredAnatomicalEntity.yaml |
| Name | blisteredAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0001928,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/blisteredAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/blisteredAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/blisteredAnatomicalEntity.tsv) |

### Blistered anatomical entity in location
*Blistering of an an anatomical entity, like blistered skin or feet.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/blisteredAnatomicalEntityInLocation.yaml |
| Name | blisteredAnatomicalEntityInLocation |
| Classes | PATO:0000460, UBERON:0001062, PATO:0001928, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/blisteredAnatomicalEntityInLocation.tsv) |

### Broken anatomical entity
*A broken anatomical entity. Consider fracturedAnatomicalEntity pattern instead.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/brokenAnatomicalEntity.yaml |
| Name | brokenAnatomicalEntity |
| Classes | PATO:0001444, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/brokenAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/brokenAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/brokenAnatomicalEntity.tsv) |

### Calcified anatomical entity
*A hardening of an anatomical entity, caused by deposition of or conversion into calcium carbonate or some other insoluble calcium compounds. Example: HP_0011415 'Calcified placenta.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/calcifiedAnatomicalEntity.yaml |
| Name | calcifiedAnatomicalEntity |
| Classes | PATO:0001447, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/calcifiedAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/calcifiedAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/calcifiedAnatomicalEntity.tsv) |

### Collapsed anatomical entity
*Use this phenotype pattern when an anatomical entity has collapsed and loses its normal structure by becoming flat or caved in.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/collapsedAnatomicalEntity.yaml |
| Name | collapsedAnatomicalEntity |
| Classes | PATO:0001478, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723),  |
| Examples |  |

### Cyst in location
*The presence of a cyst in an anatomical entity. For example, HP_0010604 'Cyst of the eyelid'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/cystInLocation.yaml |
| Name | cystInLocation |
| Classes | PATO:0001673, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/cystInLocation.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/cystInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/cystInLocation.tsv) |

### Damaged anatomical entity in location
*A damaged or injured anatomical entity in a location, such as HP_0003390 'Sensory axonal neuropathy'. The damage or injury may lead to loss of functionality or cell death.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/damagedAnatomicalEntityInLocation.yaml |
| Name | damagedAnatomicalEntityInLocation |
| Classes | PATO:0001167, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/damagedAnatomicalEntityInLocation.tsv) |

### Decreased proportion of cell type in location
*An decreased proportion of a cell, in a location, like the blood. For example: HP_0032183 Decreased proportion of memory T cells.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/decreasedProportionOfCellTypeInLocation.yaml |
| Name | decreasedProportionOfCellTypeInLocation |
| Classes | PATO:0040042, PATO:0000460, CL:0000000, BFO:0000004,  |
| Variables | cell (CL:0000000), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/decreasedProportionOfCellTypeInLocation.tsv) |

### Decreased proportion of cell type towards cell type in location
*A decreased proportion of a cell type relative to another cell type, in a location, like the blood. For example: 'decreased CD4+CD25+ regulatory T cell proportion relative to T cells in the blood'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/decreasedProportionOfCellTypeTowardsCellTypeInLocation.yaml |
| Name | decreasedProportionOfCellTypeTowardsCellTypeInLocation |
| Classes | PATO:0040042, PATO:0000460, CL:0000000, BFO:0000004,  |
| Variables | cell (CL:0000000), cell (CL:0000000), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/decreasedProportionOfCellTypeTowardsCellTypeInLocation.tsv) |

### Deviation towards lateral side of anatomical entity
*Use this pattern for phenotypes involving changed direction of position towards the side of an anatomical entity that is abnormal in space or time (e.g. permanent).*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/deviationTowardsLateralSideOfAnatomicalEntity.yaml |
| Name | deviationTowardsLateralSideOfAnatomicalEntity |
| Classes | PATO:0002176, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723),  |
| Examples |  |

### Deviation towards the medial side of anatomical entity
*Use this pattern for phenotypes involving angulation, directional change or bending towards the middle of an anatomical entity that is abnormal in space or time (e.g. permanent).*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/deviationTowardsTheMedialSideOfAnatomicalEntity.yaml |
| Name | deviationTowardsTheMedialSideOfAnatomicalEntity |
| Classes | PATO:0002177, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880),  |
| Examples |  |

### Dislocated anatomical entity
*Use this phenotype pattern when an anatomical entity developed in its normal location, but later it is found outside of that original place or position. Consider the alternative 'mislocalised PATO:0000628' positional quality pattern when the anatomical entity is found outside of its usual or proper place, because it developed in the wrong (ectopic) location.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/dislocatedAnatomicalEntity.yaml |
| Name | dislocatedAnatomicalEntity |
| Classes | PATO:0001852, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723),  |
| Examples |  |

### Disorganized anatomical entity
*Use this pattern when an anatomical entity is structurally disorganized, e.g. in case of a disorganized corneal epithelium. Do not use this pattern for fragmented or otherwise broken anatomical entities, even though you might argue that in some sense there is disorganisation in those cases as well. However, those cases belong to different phenotype patterns that are covered by structural phenotype terms in PATO that are different from the 'disorganized' quality.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/disorganizedAnatomicalEntity.yaml |
| Name | disorganizedAnatomicalEntity |
| Classes | PATO:0000937, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/disorganizedAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/disorganizedAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/disorganizedAnatomicalEntity.tsv) |

### Dysplastic anatomical entity
*A congenital malformation of an anatomical entity, such as HP_0005176 'Dysplastic aortic valve'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/dysplasticAnatomicalEntity.yaml |
| Name | dysplasticAnatomicalEntity |
| Classes | PATO:0000640, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/dysplasticAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/dysplasticAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/dysplasticAnatomicalEntity.tsv) |

### Edematous anatomical entity
*Use this pattern when the phenotype is abnormal accumulation of fluid in an anatomical entity, e.g. edema in lung.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/edematousAnatomicalEntity.yaml |
| Name | edematousAnatomicalEntity |
| Classes | PATO:0001450, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/edematousAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/edematousAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/edematousAnatomicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/edematousAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/edematousAnatomicalEntity.tsv) |

### Exserted anatomical entity
*Use this phenotype pattern when an anatomical entity is abnormally protruding or projecting from the body. These anatomical entities may be described as being prolapsed, protuberant or sticking out.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/exsertedAnatomicalEntity.yaml |
| Name | exsertedAnatomicalEntity |
| Classes | PATO:0000623, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723),  |
| Examples |  |

### Fibrotic anatomical entity
*The presence of excessive fibrous connective tissue in an anatomical entity, e.g. Endocardial fibrosis (HP_0006685), Pulmonary fibrosis (HP_0002206).*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/fibroticAnatomicalEntity.yaml |
| Name | fibroticAnatomicalEntity |
| Classes | PATO:0040019, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/fibroticAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/fibroticAnatomicalEntity.tsv) |

### Folded anatomical entity
*Use this phenotype pattern when an anatomical entity has morphological abnormalities involving folding all or any part of it over another connected part. Consider the related 'PATO:0001810 wrinkled' anatomical entity pattern where the abnormal anatomical entity is marked by one or more creases in a normally smooth surface.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/foldedAnatomicalEntity.yaml |
| Name | foldedAnatomicalEntity |
| Classes | PATO:0001910, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723),  |
| Examples |  |

### Fractured anatomical entity
*An abnormal fracture in an anatomical entity. A normal fracture is when you fall off your bike and break your arm. A pathological or abnormal fracture means that for instance you have cancer and a metastasis has weakened a bone that then fractures without an adequate trauma.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/fracturedAnatomicalEntity.yaml |
| Name | fracturedAnatomicalEntity |
| Classes | PATO:0040034, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-8169-9049](https://orcid.org/0000-0002-8169-9049),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/fracturedAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/fracturedAnatomicalEntity.tsv) |

### Fractured anatomical entity by fracture type
*This pattern is for generating fractured bone terms, such as Linear fracture in tibia or Spiral fracture in humerus.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/fracturedAnatomicalEntityByFractureType.yaml |
| Name | fracturedAnatomicalEntityByFractureType |
| Classes | PATO:0040034, PATO:0000460, UBERON:0001062,  |
| Variables | fractured (PATO:0040034), anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/fracturedAnatomicalEntityByFractureType.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/fracturedAnatomicalEntityByFractureType.tsv) |

### Hyperplastic anatomical entity
*Hyperplastic anatomical entity, for example, thyroid gland hyperplasia, characterised by an increase in cell number.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/hyperplasticAnatomicalEntity.yaml |
| Name | hyperplasticAnatomicalEntity.yaml |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000644,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/hyperplasticAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/hyperplasticAnatomicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/hyperplasticAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/hyperplasticAnatomicalEntity.tsv) |

### Hypertrophic anatomical entity
*Use this pattern for overgrowth of multicellular structures due to overgrowth and enlargement of their cells. When the mechanism is unknown or for enlargement of any other type of structure, including enlargement of single cells, please use abnormallyIncreasedSizeOfAnatomicalEntity.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/hypertrophicAnatomicalEntity.yaml |
| Name | hypertrophicAnatomicalEntity |
| Classes | PATO:0000584, PATO:0000460, UBERON:0010000,  |
| Variables | multicellular_anatomical_structure (UBERON:0010000),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/hypertrophicAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/hypertrophicAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/hypertrophicAnatomicalEntity.tsv) |

### Hypoplastic anatomical entity
*An underdeveloped or small anatomical entity. For example, HP_0008417 'Vertebral hypoplasia'*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/hypoplasticAnatomicalEntity.yaml |
| Name | hypoplasticAnatomicalEntity |
| Classes | PATO:0000645, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/hypoplasticAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/hypoplasticAnatomicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/hypoplasticAnatomicalEntity.tsv) [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/hypoplasticAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/hypoplasticAnatomicalEntity.tsv) |

### Hypoplastic anatomical entity in location
*An underdeveloped or small anatomical entity in a location. For example, PLANP:0000832 underdeveloped eyes in tail fragment*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/hypoplasticAnatomicalEntityInLocation.yaml |
| Name | hypoplasticAnatomicalEntityInLocation |
| Classes | PATO:0000645, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/hypoplasticAnatomicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/hypoplasticAnatomicalEntityInLocation.tsv) |

### Increased proportion of cell type in location
*An increased proportion of a cell, in a location, like the blood. For example: HP_0032184 Increased proportion of memory T cells.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/increasedProportionOfCellTypeInLocation.yaml |
| Name | increasedProportionOfCellTypeInLocation |
| Classes | PATO:0040043, PATO:0000460, CL:0000000, BFO:0000004,  |
| Variables | cell (CL:0000000), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/increasedProportionOfCellTypeInLocation.tsv) |

### Increased proportion of cell type towards cell type in location
*An increased proportion of a cell type relative to another cell type, in a location, like the blood. For example: 'increased CD4+CD25+ regulatory T cell proportion relative to T cells in the blood'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/increasedProportionOfCellTypeTowardsCellTypeInLocation.yaml |
| Name | increasedProportionOfCellTypeTowardsCellTypeInLocation |
| Classes | PATO:0040043, PATO:0000460, CL:0000000, BFO:0000004,  |
| Variables | cell (CL:0000000), cell (CL:0000000), independent continuant (BFO:0000004),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/increasedProportionOfCellTypeTowardsCellTypeInLocation.tsv) |

### Irregular mass density of anatomical entity
*Use it in cases of irregular mass density of anatomical entity. Please, note that 'density' in 'irregular density' implies mass density in PATO right now. This is going to change. Area and volume density will be split out and made siblings of mass density. It means that there will be new patterns to be used for phenotypes where irregular mass density is inappropriate, i.e counts of entities per unit area/volume.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/irregularMassDensityOfAnatomicalEntity.yaml |
| Name | irregularMassDensityOfAnatomicalEntity |
| Classes | PATO:0002141, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/irregularMassDensityOfAnatomicalEntity.tsv) |

### Ivory anatomical entity
*The term "ivory" in the context of this phenotype pattern refers to the increased density of an anatomical entity (e.g. epiphysis) observable by radiography (X-rays).*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/ivoryAnatomicalEntity.yaml |
| Name | ivoryAnatomicalEntity |
| Classes | PATO:0002149, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/ivoryAnatomicalEntity.tsv) |

### Ivory anatomical entity in location
*The term "ivory" in the context of this phenotype pattern refers to the increased density of an anatomical entity (e.g. epiphysis) observable by radiography (X-rays). Use this pattern for anatomical locations for which the anatomical class is composed of two anatomical terms (e.g. "Ivory epiphyses of the toes").*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyIvoryAnatomicalEntityInLocation.yaml |
| Name | abnormallyIvoryAnatomicalEntityInLocation |
| Classes | PATO:0002149, PATO:0000460, UBERON:0001062, BFO:0000004,  |
| Variables | anatomical_entity (UBERON:0001062), independent_continuant (BFO:0000004),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723), [0000-0001-7941-2961](https://orcid.org/0000-0001-7941-2961),  |
| Examples |  |

### Lesioned anatomical entity
*an antomical strucuture with one or more lesions. i.e., one or more lesions in the head*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/lesionedAnatomicalEntity.yaml |
| Name | lesionedAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0040025,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [planp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/planp/lesionedAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/lesionedAnatomicalEntity.tsv) |

### Lysed anatomical entity
*expansive cellular membrane destruction in anatomical entity.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/lysedAnatomicalEntity.yaml |
| Name | lysedAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0065001,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples |  |

### Malformed anatomical entity
*Congenital malformation of an anatomical entity, such as HP_0007993 'Malformed lacrimal duct'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/malformedAnatomicalEntity.yaml |
| Name | malformedAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000646,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/malformedAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/malformedAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/malformedAnatomicalEntity.tsv) |

### Malformed anatomical entity by type
*A malformed subtype of an anatomical entity, such as a wholly dorsalized embryo. This pattern can use any subclass of PATO malformed.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/malformedAnatomicalEntityByType.yaml |
| Name | malformedAnatomicalEntityByType |
| Classes | PATO:0000646, PATO:0000460, UBERON:0001062,  |
| Variables | malformed (PATO:0000646), anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0002-3528-5267](https://orcid.org/0000-0002-3528-5267),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/malformedAnatomicalEntityByType.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/malformedAnatomicalEntityByType.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/malformedAnatomicalEntityByType.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/malformedAnatomicalEntityByType.tsv) |

### Malformed anatomical entity in location
*Congenital malformation of an anatomical entity in a location, such as 'malformed anterior chamber in the eye'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/malformedAnatomicalEntityInLocation.yaml |
| Name | malformedAnatomicalEntityInLocation |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000646, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432),  |
| Examples | [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/malformedAnatomicalEntityInLocation.tsv) |

### Metaplastic anatomical entity
*The abnormal change from one fully differentiated cellular state into another in an anatomical entity.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/metaplasticAnatomicalEntity.yaml |
| Name | metaplasticAnatomicalEntity |
| Classes | PATO:0002101, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/metaplasticAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/metaplasticAnatomicalEntity.tsv) |

### Mislocalised anatomical entity
*Abnormal anatomic location of an anatomicaly entity, such as HP_0012731 'Ectopic anterior pituitary gland'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/mislocalisedAnatomicalEntity.yaml |
| Name | mislocalisedAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000628,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/mislocalisedAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/mislocalisedAnatomicalEntity.tsv) [wbphenotype](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/wbphenotype/mislocalisedAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/mislocalisedAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/mislocalisedAnatomicalEntity.tsv) |

### Mislocalised anatomical entity in location
*Abnormal anatomic location of an anatomicaly entity, such as XAO:0005038 'mislocalised nucleus in the myoblast'.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/mislocalisedAnatomicalEntityInLocation.yaml |
| Name | mislocalisedAnatomicalEntityInLocation |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000628, BFO:0000004,  |
| Variables | anatomical entity (UBERON:0001062), independent continuant (BFO:0000004),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0001-5208-3432](https://orcid.org/0000-0001-5208-3432), [0000-0001-9076-6015](https://orcid.org/0000-0001-9076-6015), [0000-0003-1074-8103](https://orcid.org/0000-0003-1074-8103),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/mislocalisedAnatomicalEntityInLocation.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/mislocalisedAnatomicalEntityInLocation.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/mislocalisedAnatomicalEntityInLocation.tsv) |

### Necrotic anatomical entity
*The presence of unprogrammed cell death in an anatomical entity.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/necroticAnatomicalEntity.yaml |
| Name | necroticAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000647,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/necroticAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/necroticAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/necroticAnatomicalEntity.tsv) |

### Neoplastic anatomical entity
*The presence of abnormally proliferating masses of cells in an anatomical entity.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/neoplasticAnatomicalEntity.yaml |
| Name | neoplasticAnatomicalEntity |
| Classes | PATO:0002011, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/neoplasticAnatomicalEntity.tsv) [dpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/dpo/neoplasticAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/neoplasticAnatomicalEntity.tsv) |

### Non-functional anatomical entity
*Use this phenotype pattern when an anatomical entity is unable or completely fails to perform its regular function or functions. In cases of decreased functionality of the anatomical entity, consider the phenotype pattern "abnormallyDecreasedFunctionalityOfAnatomicalEntity.yaml".*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/non-functionalAnatomicalEntity.yaml |
| Name | non-functionalAnatomicalEntity |
| Classes | PATO:0001511, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723),  |
| Examples |  |

### Obstructed anatomical entity
*Use this phenotype pattern when an anatomical space of an anatomical entity is blocked or filled with filled with one or more obstacles. Typically, this results in some impediment, blockage, or reversal of the normal flow of the contents of the entity or space. The use of an anatomical space class would be preferred to material anatomical entities for this phenotype pattern, but the logical pattern definition is kept permissive for now.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/obstructedAnatomicalEntity.yaml |
| Name | obstructedAnatomicalEntity |
| Classes | PATO:0000648, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723),  |
| Examples |  |

### Paralysed anatomical entity
*The complete loss of the ability to move a body part, e.g. a paralysed tail.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/paralysedAnatomicalEntity.yaml |
| Name | paralysedAnatomicalEntity |
| Classes | PATO:0000460, UBERON:0001062, PATO:0000763,  |
| Variables | anatomical entity (UBERON:0001062),  |
| Contributors | [0000-0002-9611-1279](https://orcid.org/0000-0002-9611-1279),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/paralysedAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/paralysedAnatomicalEntity.tsv) [xpo](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/xpo/paralysedAnatomicalEntity.tsv) [zp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/zp/paralysedAnatomicalEntity.tsv) |

### Perforate anatomical entity
*Use this pattern for phenotypes when an anatomical entity has an abnormal hole or a series of holes. Consider the alternative 'PATO:0000609 closure incomplete' pattern for anatomical entities where a hole is present normally at one developmental period but it remains open.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/perforateAnatomicalEntity.yaml |
| Name | perforateAnatomicalEntity |
| Classes | PATO:0002112, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779),  |
| Examples |  |

### Premature closure of anatomical entity
*Use this phenotype pattern in cases of premature closure of anatomical entity, e.g. premature cranial suture closure. Please, note that there may be more specific patterns for cranial suture closure phenotypes if a suitable GO biological process term becomes available.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/prematureClosureOfAnatomicalEntity.yaml |
| Name | prematureClosureOfAnatomicalEntity |
| Classes | PATO:0002166, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0002-7073-9172](https://orcid.org/0000-0002-7073-9172), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880),  |
| Examples | [mp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/mp/prematureClosureOfAnatomicalEntity.tsv) [hp](https://bbop-ontologies.s3.amazonaws.com/upheno/current/pattern-matches/hp/prematureClosureOfAnatomicalEntity.tsv) |

### Spatial deviation of anatomical entity
*Use this phenotype pattern in case an anatomical entity displays abnormal deviation in a spatial sense. The anatomical entity shows altered direction or position, but the deviation is smaller than in the case of a 'PATO:0000628 mislocalised' anatomical entity, where there is a large change in the position of the entire object. Moreover, if the shape of anatomical entity is characterised by an abnormal curvature (of an entity being inherently curved), then use the alternative 'PATO:0000406 curved' phenotype pattern.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/spatialDeviationOfAnatomicalEntity.yaml |
| Name | spatialDeviationOfAnatomicalEntity |
| Classes | PATO:0002175, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723),  |
| Examples |  |

### Wrinkled anatomical entity
*Use this phenotype pattern when anatomical entity is marked by one or more creases in a normally smooth surface. Consider the 'foldedAnatomicalEntity.yaml' phenotype pattern when the anatomical when an anatomical entity has morphological abnormalities involving folding all or any part of it over another connected part.*

| Attribute | Info |
|----------|----------|
| IRI | http://purl.obolibrary.org/obo/upheno/patterns-dev/wrinkledAnatomicalEntity.yaml |
| Name | wrinkledAnatomicalEntity |
| Classes | PATO:0001810, PATO:0000460, UBERON:0001062,  |
| Variables | anatomical_entity (UBERON:0001062),  |
| Contributors | [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140), [0000-0003-4606-0597](https://orcid.org/0000-0003-4606-0597), [0000-0002-9900-7880](https://orcid.org/0000-0002-9900-7880), [0000-0002-6490-7723](https://orcid.org/0000-0002-6490-7723), [0000-0002-7356-1779](https://orcid.org/0000-0002-7356-1779),  |
| Examples |  |