text:
<?xml version="1.0"?>

<!DOCTYPE rdf:RDF [
    <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
    <!ENTITY obo "http://purl.obolibrary.org/obo/" >
    <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
    <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
    <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
    <!ENTITY oboInOwl "http://www.geneontology.org/formats/oboInOwl#" >
]>

<rdf:RDF xmlns="&obo;x-bfo.owl#"
     xml:base="&obo;x-bfo.owl"
     xmlns:obo="http://purl.obolibrary.org/obo/"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
    <owl:Ontology rdf:about="&obo;upheno/wbphenotype/wbphenotype-importer.owl">
        <owl:imports rdf:resource="&obo;wbphenotype.owl"/>
        <owl:imports rdf:resource="&obo;upheno/imports/chebi_import.owl"/>
        <owl:imports rdf:resource="&obo;upheno/imports/extra.owl"/>
        <owl:imports rdf:resource="&obo;upheno/imports/go_import.owl"/>
        <owl:imports rdf:resource="&obo;upheno/imports/pato_import.owl"/>
        <owl:imports rdf:resource="&obo;upheno/imports/wbbt_import.owl"/>
        <owl:imports rdf:resource="&obo;upheno/wbphenotype/wbphenotype-equivalence-axioms.owl"/>
    </owl:Ontology>

    <!--
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <!-- http://purl.obolibrary.org/obo/WBPhenotype_0000886 -->

    <rdf:Description rdf:about="&obo;WBPhenotype_0000886">
        <rdfs:subClassOf rdf:resource="&obo;UPHENO_0001001"/>
    </rdf:Description>
</rdf:RDF>

<!-- Generated by the OWL API (version 3.4.2) http://owlapi.sourceforge.net -->

repo_name: obophenotype/upheno

repo_language: Makefile

mime_type: text/plain


text:
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
    <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/upheno/imports/chebi_import.owl" uri="../imports/chebi_import.owl"/>
    <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/upheno/imports/uberon_import.owl" uri="../imports/uberon_import.owl"/>
    <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/upheno/imports/wbbt_import.owl" uri="../imports/wbbt_import.owl"/>
    <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/upheno/imports/pato_import.owl" uri="../imports/pato_import.owl"/>
    <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/upheno/imports/go_import.owl" uri="../imports/go_import.owl"/>
    <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/upheno/imports/wbphenotypeath_import.owl" uri="../imports/wbphenotypeath_import.owl"/>
    <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/wbphenotype.owl" uri="../wbphenotype.owl"/>
    <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/wbphenotype/wbphenotype-to-mp-match-best.owl" uri="wbphenotype-to-mp-match-best.owl"/>
    <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/wbphenotype/wbphenotype-equivalence-axioms.owl" uri="wbphenotype-equivalence-axioms.owl"/>
    <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/wbphenotype/wbphenotype-equivalence-axioms-subq.owl" uri="wbphenotype-equivalence-axioms-subq.owl"/>
    <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/wbphenotype/wbphenotype-equivalence-axioms-subq-ubr.owl" uri="wbphenotype-equivalence-axioms-subq-ubr.owl"/>
    <group id="Folder Repository, directory=, recursive=true, Auto-Update=false, version=2" prefer="public" xml:base="">
    </group>
</catalog>


text:
WP_URL = http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/phenotype_ontology_obo.cgi

wbphenotype.obo:
	wget $(WP_URL) -O $@


text:
# DEPRECATED!!
Worm Phenotype Equivalence Axioms

See:

 * https://github.com/obophenotype/upheno/wiki/WBPhenotype

CURRENT WORKFLOW:

Please note We have switched to editing equivalence axioms in Protege
(the OWL will be primary). The core WBPhenotype will remain in obo
with the primary version at WB.

 * Edit wbphenotype-equivalence-axioms-edit.owl
 * Do not edit WPO terms or external ontology terms - equiv axioms only
 * Have Elk turned on the whole time and sync repeatedly
 * Check Jenkins after commit


text:
<?xml version="1.0"?>

<!DOCTYPE rdf:RDF [
    <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
    <!ENTITY obo "http://purl.obolibrary.org/obo/" >
    <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
    <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
    <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
    <!ENTITY oboInOwl "http://www.geneontology.org/formats/oboInOwl#" >
]>

<rdf:RDF xmlns="&obo;x-bfo.owl#"
     xml:base="&obo;x-bfo.owl"
     xmlns:obo="http://purl.obolibrary.org/obo/"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
    <owl:Ontology rdf:about="&obo;upheno/dpo/dpo-bridge.owl">
    </owl:Ontology>

    <!--
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <rdf:Description rdf:about="&obo;FBcv_0001347">
        <rdfs:subClassOf rdf:resource="&obo;UPHENO_0001001"/>
    </rdf:Description>
</rdf:RDF>

<!-- Generated by the OWL API (version 3.4.2) http://owlapi.sourceforge.net -->