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Consequently, Spo11-independent meiotic DSBs resulted in aneuploidies and nonallelic homologous recombinations between repetitive sequences such as ribosomal DNA and retrotransposons.", "language": "english", "position": {"atoms": [{"position_id": 7142, "txt": " Consequently, Spo11-independent meiotic DSBs resulted in aneuploidies and nonallelic homologous recombinations between repetitive sequences such as ribosomal DNA and retrotransposons.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/section[1]/p"}]}, "tags": [], "label": "abstract", "web_segment_id": 145, "global_sentence_id": 155, "edu_l1_label": "IOS"}, {"txt": " These results suggest a pivotal role of Spo11-induced recombination in preventing chromosomal abnormality.", "language": "english", "position": {"atoms": [{"position_id": 7143, "txt": " These results suggest a pivotal role of Spo11-induced recombination in preventing chromosomal abnormality.", "x": 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"tags": [], "label": "content", "web_segment_id": 147, "global_sentence_id": 158, "edu_l1_label": "BOS"}, {"txt": "Introduction", "language": "english", "position": {"atoms": [{"position_id": 7147, "txt": "Introduction", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/h2[2]"}]}, "tags": ["h2"], "label": "title1", "web_segment_id": 148, "global_sentence_id": 159, "edu_l1_label": "BOS"}, {"txt": "DNA double-strand breaks (DSBs) that occur in mitotic cells can induce chromosomal translocations (TLs), deletions (DELs), loss of heterozygosity (LOH) events, duplications (DUPs), and increasing genomic instability.", "language": "english", "position": {"atoms": [{"position_id": 7149, "txt": "DNA double-strand breaks (DSBs) that occur in mitotic cells can induce chromosomal translocations (TLs), deletions (DELs), loss of heterozygosity (LOH) events, duplications (DUPs), and increasing genomic instability.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[1]"}]}, "tags": [], "label": "content", "web_segment_id": 149, "global_sentence_id": 160, "edu_l1_label": "IOS"}, {"txt": " On the other hand, DSBs during meiosis are formed only at limited sites called DSB hotspots during prophase I through complex mechanisms involving various meiosis-specific recombinases, including the DSB-forming protein Spo11.", "language": "english", "position": {"atoms": [{"position_id": 7150, "txt": " On the other hand, DSBs during meiosis are formed only at limited sites called DSB hotspots during prophase I through complex mechanisms involving various meiosis-specific recombinases, including the DSB-forming protein Spo11.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[1]"}]}, "tags": [], "label": "content", "web_segment_id": 149, "global_sentence_id": 161, "edu_l1_label": "IOS"}, {"txt": " Moreover, recombinations induced 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"web_segment_id": 174, "global_sentence_id": 249, "edu_l1_label": "IOS"}, {"txt": " LOHs such as SGCs and BIRs were identified based on mapped coverage and allele frequency of variants.", "language": "english", "position": {"atoms": [{"position_id": 7456, "txt": " LOHs such as SGCs and BIRs were identified based on mapped coverage and allele frequency of variants.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[15]/a[4]"}]}, "tags": [], "label": "content", "web_segment_id": 174, "global_sentence_id": 250, "edu_l1_label": "IOS"}, {"txt": " When sequence reads are mapped to the diploid genome, the LOH tracts show reciprocal alterations in coverage on homologous chromosomes.", "language": "english", "position": {"atoms": [{"position_id": 7457, "txt": " When sequence reads are mapped to the diploid genome, the LOH tracts show reciprocal alterations in coverage on homologous chromosomes.", "x": 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"/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[20]/em[2]"}]}, "tags": ["em"], "label": "content", "web_segment_id": 184, "global_sentence_id": 315, "edu_l1_label": "IOS"}, {"txt": "Results", "language": "english", "position": {"atoms": [{"position_id": 7721, "txt": "Results", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/h2[4]"}]}, "tags": ["h2"], "label": "title1", "web_segment_id": 185, "global_sentence_id": 316, "edu_l1_label": "BOS"}, {"txt": "Development of photoactivatable MboI restriction enzyme MagMboI", "language": "english", "position": {"atoms": [{"position_id": 7723, "txt": "Development of photoactivatable MboI restriction enzyme MagMboI", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/h3[16]"}]}, "tags": ["h3"], "label": "title2", "web_segment_id": 186, "global_sentence_id": 317, "edu_l1_label": "IOS"}, {"txt": "To construct a photoactivatable restriction enzyme, we split a restriction enzyme MboI into two and linked each part with a set of light-induced dimerization module, “Magnets” (Fig.", "language": "english", "position": {"atoms": [{"position_id": 7725, "txt": "To construct a photoactivatable restriction enzyme, we split a restriction enzyme MboI into two and linked each part with a set of light-induced dimerization module, “Magnets” (Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[21]"}]}, "tags": [], "label": "content", "web_segment_id": 187, "global_sentence_id": 318, "edu_l1_label": "IOS"}, {"txt": " 1A).", "language": "english", "position": {"atoms": [{"position_id": 7726, "txt": " ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[21]"}, {"position_id": 7728, "txt": "1A", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[21]/a[1]"}, {"position_id": 7730, "txt": ").", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[21]/a[1]"}]}, "tags": [], "label": "content", "web_segment_id": 187, "global_sentence_id": 319, "edu_l1_label": "IOS"}, {"txt": " Magnets are composed of a couple of modified light-switch protein tags (pMag and nMag) [56–60], which are derived from a blue-light receptor VIVID of Neurospora crassa.", "language": "english", "position": {"atoms": [{"position_id": 7731, "txt": " Magnets are composed of a couple of modified light-switch protein tags (pMag and nMag) [", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[21]/a[1]"}, {"position_id": 7733, "txt": "56–60", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[21]/a[2]"}, {"position_id": 7735, "txt": "], which are derived from a blue-light receptor VIVID of ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[21]/a[2]"}, {"position_id": 7737, "txt": "Neurospora crassa", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[21]/em[1]"}, {"position_id": 7739, "txt": ".", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[21]/em[1]"}]}, "tags": ["em"], "label": "content", "web_segment_id": 187, "global_sentence_id": 320, "edu_l1_label": "IOS"}, {"txt": " These tags rapidly dimerize under exposure to blue light (wavelength:", "language": "english", "position": {"atoms": [{"position_id": 7740, "txt": " These tags rapidly dimerize under exposure to blue light (wavelength:", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[21]/em[1]"}]}, "tags": ["em"], "label": "content", "web_segment_id": 187, "global_sentence_id": 321, "edu_l1_label": "IOS"}, {"txt": " 470 nm) and revert to monomers when shielded from light.", "language": "english", "position": {"atoms": [{"position_id": 7741, "txt": " 470 nm) and revert to monomers when shielded from light.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[21]/em[1]"}]}, "tags": ["em"], "label": "content", "web_segment_id": 187, "global_sentence_id": 322, "edu_l1_label": "IOS"}, {"txt": " MboI is a restriction enzyme that recognizes and cleaves a specific four-base sequence (5′-GATC-3′).", "language": "english", "position": {"atoms": [{"position_id": 7742, "txt": " MboI is a restriction enzyme that recognizes and cleaves a specific four-base sequence (5′-GATC-3′).", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[21]/em[1]"}]}, "tags": ["em"], "label": "content", "web_segment_id": 187, "global_sentence_id": 323, "edu_l1_label": "IOS"}, {"txt": " It has been demonstrated to induce a high DSB response in vivo compared to other restriction enzymes [9].", "language": "english", "position": {"atoms": [{"position_id": 7743, "txt": " It has been demonstrated to induce a high DSB response ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[21]/em[1]"}, {"position_id": 7745, "txt": "in vivo", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[21]/em[2]"}, {"position_id": 7747, "txt": " compared to other restriction enzymes [", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[21]/em[2]"}, {"position_id": 7749, "txt": "9", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[21]/a[3]"}, {"position_id": 7751, "txt": "].", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[21]/a[3]"}]}, "tags": ["em"], "label": "content", "web_segment_id": 187, "global_sentence_id": 324, "edu_l1_label": "IOS"}, 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"/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[4]/div/div/div[2]/p/strong[5]"}]}, "tags": ["strong"], "label": "figure_title", "web_segment_id": 190, "global_sentence_id": 336, "edu_l1_label": "EDU_O"}, {"txt": " The amino acid residues important for high DNA cleavage activity were shown in the figure (R140, N142, R143, D186, E199, N201, and S208) [61].", "language": "english", "position": {"atoms": [{"position_id": 7785, "txt": " The amino acid residues important for high DNA cleavage activity were shown in the figure (R140, N142, R143, D186, E199, N201, and S208) [", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[4]/div/div/div[2]/p/strong[5]"}, {"position_id": 7787, "txt": "61", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[4]/div/div/div[2]/p/a"}, {"position_id": 7789, "txt": "].", "x": 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12 hours following light exposure.", "language": "english", "position": {"atoms": [{"position_id": 7800, "txt": " (1) under dark conditions; (2) exposed to blue light for 30 min; (3) under dark conditions for 12 hours following light exposure.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[4]/div/div/div[2]/p/strong[7]"}]}, "tags": ["strong"], "label": "figure_title", "web_segment_id": 190, "global_sentence_id": 340, "edu_l1_label": "EDU_O"}, {"txt": " An uncropped image is in Supplementary Fig.", "language": "english", "position": {"atoms": [{"position_id": 7801, "txt": " An uncropped image is in ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[4]/div/div/div[2]/p/strong[7]"}, {"position_id": 7803, "txt": "Supplementary Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[4]/div/div/div[2]/p/span[3]/a"}]}, "tags": ["strong"], "label": "figure_title", "web_segment_id": 190, "global_sentence_id": 341, "edu_l1_label": "EDU_O"}, {"txt": " S5.", "language": "english", "position": {"atoms": [{"position_id": 7804, "txt": " S5", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[4]/div/div/div[2]/p/span[3]/a"}, {"position_id": 7806, "txt": ".", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[4]/div/div/div[2]/p/span[3]"}]}, "tags": [], "label": "figure_title", "web_segment_id": 190, "global_sentence_id": 342, "edu_l1_label": "EDU_O"}, {"txt": " (H) Ratio of signal intensity of P-Rad53 to total Rad53.", "language": "english", "position": {"atoms": [{"position_id": 7807, "txt": " (", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[4]/div/div/div[2]/p/span[3]"}, {"position_id": 7809, "txt": "H", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[4]/div/div/div[2]/p/strong[8]"}, {"position_id": 7811, "txt": ") Ratio of signal intensity of P-Rad53 to total Rad53.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[4]/div/div/div[2]/p/strong[8]"}]}, "tags": ["strong"], "label": "figure_title", "web_segment_id": 190, "global_sentence_id": 343, "edu_l1_label": "EDU_O"}, {"txt": "To identify the optimal split site of MboI, we prepared 15 types of vectors expressing fragments of MboI, each split at a different location and linked to Magnets (Fig.", "language": "english", "position": {"atoms": [{"position_id": 7813, "txt": "To identify the optimal split site of MboI, we prepared 15 types of vectors expressing fragments of MboI, each split at a different location and linked to Magnets (Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[22]"}]}, 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the N-terminal fragment fused to nMag (N-MboI) and the C-terminal fragment linked with pMag (C-MboI), separated by an in-frame 2A self-cleaving peptide (P2A) (", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[22]/a"}, {"position_id": 7821, "txt": "Supplementary Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[22]/span[3]/a"}]}, "tags": [], "label": "content", "web_segment_id": 191, "global_sentence_id": 346, "edu_l1_label": "IOS"}, {"txt": " S3).", "language": "english", "position": {"atoms": [{"position_id": 7822, "txt": " S3", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[22]/span[3]/a"}, {"position_id": 7824, "txt": ").", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[22]/span[3]"}]}, "tags": [], "label": "content", "web_segment_id": 191, "global_sentence_id": 347, "edu_l1_label": "IOS"}, {"txt": "To select the optimal MagMboI set that shows the most efficient light-dependent activity, we introduced each expression plasmid into a haploid S. cerevisiae strain to test the growth defect under blue light exposure for 48 h (Fig.", "language": "english", "position": {"atoms": [{"position_id": 7826, "txt": "To select the optimal MagMboI set that shows the most efficient light-dependent activity, we introduced each expression plasmid into a haploid ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]"}, {"position_id": 7828, "txt": "S. cerevisiae", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/em"}, {"position_id": 7830, "txt": " strain to test the growth defect under blue light exposure for 48 h (Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/em"}]}, "tags": ["em"], "label": "content", "web_segment_id": 192, "global_sentence_id": 348, "edu_l1_label": "IOS"}, {"txt": " 1C).", "language": "english", "position": {"atoms": [{"position_id": 7831, "txt": " ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/em"}, {"position_id": 7833, "txt": "1C", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[1]"}, {"position_id": 7835, "txt": ").", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[1]"}]}, "tags": ["em"], "label": "content", "web_segment_id": 192, "global_sentence_id": 349, "edu_l1_label": "IOS"}, {"txt": " Most of the MagMboI sets (except for MagMboI-2 and MagMboI-3) showed equivalent growth to the control (empty vector) under dark conditions due to the inactivation of DNA cleavage activity.", "language": "english", "position": {"atoms": [{"position_id": 7836, "txt": " Most of the MagMboI sets (except for MagMboI-2 and MagMboI-3) showed equivalent growth to the control (empty vector) under dark conditions due to the inactivation of DNA cleavage activity.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[1]"}]}, "tags": [], "label": "content", "web_segment_id": 192, "global_sentence_id": 350, "edu_l1_label": "IOS"}, {"txt": " Control cells with the empty vector exhibited the same growth rate under blue light as under dark conditions, indicating that the blue light exposure had little effect on yeast growth.", "language": "english", "position": {"atoms": [{"position_id": 7837, "txt": " Control cells with the empty vector exhibited the same growth rate under blue light as under dark conditions, indicating that the blue light exposure had little effect on yeast growth.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[1]"}]}, "tags": [], "label": "content", "web_segment_id": 192, "global_sentence_id": 351, "edu_l1_label": "IOS"}, {"txt": " MagMboI-2 and MagMboI-3 sets showed obvious growth defect under both dark and light conditions.", "language": "english", "position": {"atoms": [{"position_id": 7838, "txt": " MagMboI-2 and MagMboI-3 sets showed obvious growth defect under both dark and light conditions.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[1]"}]}, "tags": [], "label": "content", "web_segment_id": 192, "global_sentence_id": 352, "edu_l1_label": "IOS"}, {"txt": " In contrast, MagMboI-8 (splitting at 157th/158th amino acids) and MagMboI-12 (splitting at 227th/228th amino acids) sets showed equivalent growth rate to the control in dark conditions, but significant growth defects were observed only under blue light exposure.", "language": "english", "position": {"atoms": [{"position_id": 7839, "txt": " In contrast, MagMboI-8 (splitting at 157th/158th amino acids) and MagMboI-12 (splitting at 227th/228th amino acids) sets showed equivalent growth rate to the control in dark conditions, but significant growth defects were observed only under blue light exposure.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[1]"}]}, "tags": [], "label": "content", "web_segment_id": 192, "global_sentence_id": 353, "edu_l1_label": "IOS"}, {"txt": " To compare the DSB levels among different constructs, we quantified the cleaved DNA extracted from each strain carrying each MagMboI construct using TapeStation system (Agilent Technologies).", "language": "english", "position": {"atoms": [{"position_id": 7840, "txt": " To compare the DSB levels among different constructs, we quantified the cleaved DNA extracted from each strain carrying each MagMboI construct using TapeStation system (Agilent Technologies).", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[1]"}]}, "tags": [], "label": "content", "web_segment_id": 192, "global_sentence_id": 354, "edu_l1_label": "IOS"}, {"txt": " As a result, MagMboI-8 was the well-controlled variant that exhibited activity exclusively under blue light exposure (Fig.", "language": "english", "position": {"atoms": [{"position_id": 7841, "txt": " As a result, MagMboI-8 was the well-controlled variant that exhibited activity exclusively under blue light exposure (Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[1]"}]}, "tags": [], "label": "content", "web_segment_id": 192, "global_sentence_id": 355, "edu_l1_label": "IOS"}, {"txt": " 1D).", "language": "english", "position": {"atoms": [{"position_id": 7842, "txt": " ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[1]"}, {"position_id": 7844, "txt": "1D", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[2]"}, {"position_id": 7846, "txt": ").", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[2]"}]}, "tags": [], "label": "content", "web_segment_id": 192, "global_sentence_id": 356, "edu_l1_label": "IOS"}, {"txt": " The results of other variants were shown in Supplementary Fig.", "language": "english", "position": {"atoms": [{"position_id": 7847, "txt": " The results of other variants were shown in ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[2]"}, {"position_id": 7849, "txt": "Supplementary Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/span[4]/a"}]}, "tags": [], "label": "content", "web_segment_id": 192, "global_sentence_id": 357, "edu_l1_label": "IOS"}, {"txt": " S4.", "language": "english", "position": {"atoms": [{"position_id": 7850, "txt": " S4", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/span[4]/a"}, {"position_id": 7852, "txt": ".", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/span[4]"}]}, "tags": [], "label": "content", "web_segment_id": 192, "global_sentence_id": 358, "edu_l1_label": "IOS"}, {"txt": " Since the 3D structure of MboI has not been elucidated, we predicted structural model of MboI using AlphaFold2 [44].", "language": "english", "position": {"atoms": [{"position_id": 7853, "txt": " Since the 3D structure of MboI has not been elucidated, we predicted structural model of MboI using AlphaFold2 [", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/span[4]"}, {"position_id": 7855, "txt": "44", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[3]"}, {"position_id": 7857, "txt": "].", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[3]"}]}, "tags": [], "label": "content", "web_segment_id": 192, "global_sentence_id": 359, "edu_l1_label": "IOS"}, {"txt": " Mapping of amino acid residues important for DNA cleavage activity showed that the active site is located inside the structural groove of MboI [61] (Fig.", "language": "english", "position": {"atoms": [{"position_id": 7858, "txt": " Mapping of amino acid residues important for DNA cleavage activity showed that the active site is located inside the structural groove of MboI [", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[3]"}, {"position_id": 7860, "txt": "61", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[4]"}, {"position_id": 7862, "txt": "] (Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[4]"}]}, "tags": [], "label": "content", "web_segment_id": 192, "global_sentence_id": 360, "edu_l1_label": "IOS"}, {"txt": " 1E).", "language": "english", "position": {"atoms": [{"position_id": 7863, "txt": " ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[4]"}, {"position_id": 7865, "txt": "1E", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[5]"}, {"position_id": 7867, "txt": ").", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[5]"}]}, "tags": [], "label": "content", "web_segment_id": 192, "global_sentence_id": 361, "edu_l1_label": "IOS"}, {"txt": " Overlaying the structural model of MboI with that of MagMboI revealed that the dimerized pMag and nMag were on the opposite side of the active site (Fig.", "language": "english", "position": {"atoms": [{"position_id": 7868, "txt": " Overlaying the structural model of MboI with that of MagMboI revealed that the dimerized pMag and nMag were on the opposite side of the active site (Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[5]"}]}, "tags": [], "label": "content", "web_segment_id": 192, "global_sentence_id": 362, "edu_l1_label": "IOS"}, {"txt": " 1F).", "language": "english", "position": {"atoms": [{"position_id": 7869, "txt": " ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[5]"}, {"position_id": 7871, "txt": "1F", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[6]"}, {"position_id": 7873, "txt": ").", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[6]"}]}, "tags": [], "label": "content", "web_segment_id": 192, "global_sentence_id": 363, "edu_l1_label": "IOS"}, {"txt": " Therefore, it is likely that the split sets of MagMboI-8 can efficiently assemble to active enzymes only when exposed to blue light.", "language": "english", "position": {"atoms": [{"position_id": 7874, "txt": " Therefore, it is likely that the split sets of MagMboI-8 can efficiently assemble to active enzymes only when exposed to blue light.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[23]/a[6]"}]}, "tags": [], "label": "content", "web_segment_id": 192, "global_sentence_id": 364, "edu_l1_label": "IOS"}, {"txt": "To verify whether MagMboI induces DNA damage response, phosphorylation of a DNA damage checkpoint protein Rad53 was examined by the band mobility shift in sodium dodecyl sulfate–polyacrylamide gel electrophoresis.", "language": "english", "position": {"atoms": [{"position_id": 7876, "txt": "To verify whether MagMboI induces DNA damage response, phosphorylation of a DNA damage checkpoint protein Rad53 was examined by the band mobility shift in sodium dodecyl sulfate–polyacrylamide gel electrophoresis.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[24]"}]}, "tags": [], "label": "content", "web_segment_id": 193, "global_sentence_id": 365, "edu_l1_label": "IOS"}, {"txt": " While the band size of Rad53 in the control strain carrying the empty vector did not change upon blue light irradiation, the strain expressing MagMboI-8 showed a partial band shift (representing phosphorylated Rad53) in response to blue light irradiation, which diminished after returning to dark conditions (Fig.", "language": "english", "position": {"atoms": [{"position_id": 7877, "txt": " While the band size of Rad53 in the control strain carrying the empty vector did not change upon blue light irradiation, the strain expressing MagMboI-8 showed a partial band shift (representing phosphorylated Rad53) in response to blue light irradiation, which diminished after returning to dark conditions (Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[24]"}]}, "tags": [], "label": "content", "web_segment_id": 193, "global_sentence_id": 366, "edu_l1_label": "IOS"}, {"txt": " 1G and H, and Supplementary Fig.", "language": "english", "position": {"atoms": [{"position_id": 7878, "txt": " ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[24]"}, {"position_id": 7880, "txt": "1G", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[24]/a[1]"}, {"position_id": 7882, "txt": " and ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[24]/a[1]"}, {"position_id": 7884, "txt": "H", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[24]/a[2]"}, {"position_id": 7886, "txt": ", and ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[24]/a[2]"}, {"position_id": 7888, "txt": "Supplementary Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[24]/span[4]/a"}]}, "tags": [], "label": "content", "web_segment_id": 193, "global_sentence_id": 367, "edu_l1_label": "IOS"}, {"txt": " S5).", "language": "english", "position": {"atoms": [{"position_id": 7889, "txt": " S5", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[24]/span[4]/a"}, {"position_id": 7891, "txt": ").", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[24]/span[4]"}]}, "tags": [], "label": "content", "web_segment_id": 193, "global_sentence_id": 368, "edu_l1_label": "IOS"}, {"txt": " These results indicate that MagMboI activates a DNA damage response upon blue light irradiation and is reversibly inactivated when returned to dark conditions.", "language": "english", "position": {"atoms": [{"position_id": 7892, "txt": " These results indicate that MagMboI activates a DNA damage response upon blue light irradiation and is reversibly inactivated when returned to dark conditions.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[24]/span[4]"}]}, "tags": [], "label": "content", "web_segment_id": 193, "global_sentence_id": 369, "edu_l1_label": "IOS"}, {"txt": "Chromosomal rearrangements induced by MagMboI in mitotic cells", "language": "english", "position": {"atoms": [{"position_id": 7894, "txt": "Chromosomal rearrangements induced by MagMboI in mitotic cells", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/h3[17]"}]}, "tags": ["h3"], "label": "title2", "web_segment_id": 194, "global_sentence_id": 370, "edu_l1_label": "IOS"}, {"txt": "We next introduced MagMboI-8 into a mitotic diploid yeast to verify its ability to induce 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single nucleotide polymorphisms [", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[25]/em"}, {"position_id": 7908, "txt": "62", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[25]/a[2]"}, {"position_id": 7910, "txt": "].", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[25]/a[2]"}]}, "tags": ["em"], "label": "content", "web_segment_id": 195, "global_sentence_id": 373, "edu_l1_label": "IOS"}, {"txt": " The vector containing MagMboI-8 was introduced into SYW4, and after transcriptional activation for 4 h, blue light was irradiated for 30 min.", "language": "english", "position": {"atoms": [{"position_id": 7911, "txt": " The vector containing MagMboI-8 was introduced into SYW4, and after transcriptional activation for 4 h, blue light was irradiated for 30 min.", "x": 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"/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[30]/a[6]"}]}, "tags": [], "label": "content", "web_segment_id": 207, "global_sentence_id": 459, "edu_l1_label": "IOS"}, {"txt": " Both “spo11Δ” and “spo11Δ MagMboI\" exhibited very low viability (<1%) irrespective of blue right irradiation (Supplementary Fig.", "language": "english", "position": {"atoms": [{"position_id": 8251, "txt": " Both “", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[30]/a[6]"}, {"position_id": 8253, "txt": "spo11Δ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[30]/em[7]"}, {"position_id": 8255, "txt": "” and “s", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[30]/em[7]"}, {"position_id": 8257, "txt": "po11Δ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[30]/em[8]"}, {"position_id": 8259, "txt": " MagMboI\" exhibited very low viability (<1%) irrespective of blue right irradiation (", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[30]/em[8]"}, {"position_id": 8261, "txt": "Supplementary Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[30]/span[8]/a"}]}, "tags": ["em"], "label": "content", "web_segment_id": 207, "global_sentence_id": 460, "edu_l1_label": "IOS"}, {"txt": " S12).", "language": "english", "position": {"atoms": [{"position_id": 8262, "txt": " S12", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[30]/span[8]/a"}, {"position_id": 8264, "txt": ").", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[30]/span[8]"}]}, "tags": [], "label": "content", "web_segment_id": 207, "global_sentence_id": 461, "edu_l1_label": "IOS"}, {"txt": "Meiotic recombinations 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Supplementary Figs S13 and S14).", "language": "english", "position": {"atoms": [{"position_id": 8269, "txt": " ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[31]"}, {"position_id": 8271, "txt": "3D", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[31]/a[1]"}, {"position_id": 8273, "txt": " and ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[31]/a[1]"}, {"position_id": 8275, "txt": "E", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[31]/a[2]"}, {"position_id": 8277, "txt": " and ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[31]/a[2]"}, {"position_id": 8279, "txt": "Supplementary Figs S13", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[31]/span[4]/a"}, {"position_id": 8281, "txt": " and ", "x": 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"/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[31]/span[6]"}]}, "tags": [], "label": "content", "web_segment_id": 209, "global_sentence_id": 465, "edu_l1_label": "IOS"}, {"txt": " Therefore, conventional tetrad analysis for detecting COs is not feasible in this study, and recombination events were identified solely based on SNP markers.", "language": "english", "position": {"atoms": [{"position_id": 8287, "txt": " Therefore, conventional tetrad analysis for detecting COs is not feasible in this study, and recombination events were identified solely based on SNP markers.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[31]/span[6]"}]}, "tags": [], "label": "content", "web_segment_id": 209, "global_sentence_id": 466, "edu_l1_label": "IOS"}, {"txt": " As a result, reciprocal COs could not be detected, highlighting a limitation of our study.", "language": "english", "position": {"atoms": 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MagMboI-induced CO (MagMboI-CO) varied widely from 0–20 times (Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[32]/sup[1]"}]}, "tags": ["em"], "label": "content", "web_segment_id": 210, "global_sentence_id": 472, "edu_l1_label": "IOS"}, {"txt": " 4A).", "language": "english", "position": {"atoms": [{"position_id": 8321, "txt": " ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[32]/sup[1]"}, {"position_id": 8323, "txt": "4A", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[32]/a[4]"}, {"position_id": 8325, "txt": ").", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[32]/a[4]"}]}, "tags": [], "label": "content", "web_segment_id": 210, "global_sentence_id": 473, "edu_l1_label": "IOS"}, {"txt": " In this study, the CO count represents the number of switches rather than the number of segments.", 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"/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[32]/a[5]"}]}, "tags": ["em"], "label": "content", "web_segment_id": 210, "global_sentence_id": 476, "edu_l1_label": "IOS"}, {"txt": " Notably, a few chromosomes (e.g. chromosome X in mm11) harbored no detectable COs, indicating no assurance of obligatory CO formation (Fig.", "language": "english", "position": {"atoms": [{"position_id": 8351, "txt": " Notably, a few chromosomes (e.g. chromosome X in mm11) harbored no detectable COs, indicating no assurance of obligatory CO formation (Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[32]/a[5]"}]}, "tags": [], "label": "content", "web_segment_id": 210, "global_sentence_id": 477, "edu_l1_label": "IOS"}, {"txt": " 3E).", "language": "english", "position": {"atoms": [{"position_id": 8352, "txt": " ", "x": 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with the distribution of recombination sites in ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[34]/a[6]"}, {"position_id": 8544, "txt": "SPO11", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[34]/em"}, {"position_id": 8546, "txt": "+", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[34]/sup"}, {"position_id": 8548, "txt": " (", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[34]/sup"}, {"position_id": 8550, "txt": "Supplementary Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[34]/span[8]/a"}]}, "tags": ["em"], "label": "content", "web_segment_id": 215, "global_sentence_id": 508, "edu_l1_label": "IOS"}, {"txt": " S16).", "language": "english", "position": {"atoms": [{"position_id": 8551, "txt": " S16", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[34]/span[8]/a"}, {"position_id": 8553, "txt": ").", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[34]/span[8]"}]}, "tags": [], "label": "content", "web_segment_id": 215, "global_sentence_id": 509, "edu_l1_label": "IOS"}, {"txt": "Spo11-induced DSB hotspots are preferentially localized in NDRs [6, 29, 30], since Spo11 and Spo11-associated DSB proteins can easily access DNA.", "language": "english", "position": {"atoms": [{"position_id": 8555, "txt": "Spo11-induced DSB hotspots are preferentially localized in NDRs [", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[35]"}, {"position_id": 8557, "txt": "6", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[35]/a[1]"}, {"position_id": 8559, "txt": ", ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[35]/a[1]"}, {"position_id": 8561, "txt": "29", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[35]/a[2]"}, {"position_id": 8563, "txt": ", ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[35]/a[2]"}, {"position_id": 8565, "txt": "30", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[35]/a[3]"}, {"position_id": 8567, "txt": "], since Spo11 and Spo11-associated DSB proteins can easily access DNA.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[35]/a[3]"}]}, "tags": [], "label": "content", "web_segment_id": 216, "global_sentence_id": 510, "edu_l1_label": "IOS"}, {"txt": " However, not all NDRs are Spo11 hotspots, and some NDRs are hardly subject to Spo11-induced DSBs.", "language": "english", "position": {"atoms": [{"position_id": 8568, "txt": " However, not all NDRs are Spo11 hotspots, and some NDRs are hardly subject to Spo11-induced DSBs.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[35]/a[3]"}]}, "tags": [], "label": "content", "web_segment_id": 216, "global_sentence_id": 511, "edu_l1_label": "IOS"}, {"txt": " We examined the distance between these NDRs and the recombination sites.", "language": "english", "position": {"atoms": [{"position_id": 8569, "txt": " We examined the distance between these NDRs and the recombination sites.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[35]/a[3]"}]}, "tags": [], "label": "content", "web_segment_id": 216, "global_sentence_id": 512, "edu_l1_label": "IOS"}, {"txt": " The distance between all NDRs and MagMboI-COs was not significantly different from that of Spo11-COs.", "language": "english", "position": {"atoms": [{"position_id": 8570, "txt": " The distance between all NDRs and MagMboI-COs was not significantly different from that of Spo11-COs.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[35]/a[3]"}]}, "tags": [], "label": "content", "web_segment_id": 216, "global_sentence_id": 513, "edu_l1_label": "IOS"}, {"txt": " This suggests that MagMboI induces DSBs in NDRs similarly to Spo11 (Fig.", "language": "english", "position": {"atoms": [{"position_id": 8571, "txt": " This suggests that MagMboI induces DSBs in NDRs similarly to Spo11 (Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[35]/a[3]"}]}, "tags": [], "label": "content", "web_segment_id": 216, "global_sentence_id": 514, "edu_l1_label": "IOS"}, {"txt": " 4C).", "language": "english", "position": {"atoms": [{"position_id": 8572, "txt": " ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[35]/a[3]"}, {"position_id": 8574, "txt": "4C", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[35]/a[4]"}, {"position_id": 8576, "txt": ").", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[35]/a[4]"}]}, "tags": [], "label": "content", "web_segment_id": 216, "global_sentence_id": 515, "edu_l1_label": "IOS"}, {"txt": "The NDRs with or without Spo11-induced DSBs were identified by Spo11-bound oligonucleotide (Spo11-oligo) sequencing [6].", "language": "english", "position": {"atoms": [{"position_id": 8578, "txt": "The NDRs with or without Spo11-induced DSBs were identified by Spo11-bound oligonucleotide (Spo11-oligo) sequencing [", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[36]"}, {"position_id": 8580, "txt": "6", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[36]/a[1]"}, {"position_id": 8582, "txt": "].", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[36]/a[1]"}]}, "tags": [], "label": "content", "web_segment_id": 217, "global_sentence_id": 516, "edu_l1_label": "IOS"}, {"txt": " We thus compared the distances between MagMboI-COs and DSB-hot NDRs (with Spo11-oligo reads) or DSB-cold NDRs (without Spo11-oligo reads).", "language": "english", "position": {"atoms": [{"position_id": 8583, "txt": " We thus compared the distances between MagMboI-COs and DSB-hot NDRs (with Spo11-oligo reads) or DSB-cold NDRs (without Spo11-oligo reads).", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[36]/a[1]"}]}, "tags": [], "label": "content", "web_segment_id": 217, "global_sentence_id": 517, "edu_l1_label": "IOS"}, {"txt": " The results showed that the distance of MagMboI-COs to DSB-cold NDRs was statistically shorter than that to Spo11-COs (Fig.", "language": "english", "position": {"atoms": [{"position_id": 8584, "txt": " The results showed that the distance of MagMboI-COs to DSB-cold NDRs was statistically shorter than that to Spo11-COs (Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[36]/a[1]"}]}, "tags": [], "label": "content", "web_segment_id": 217, "global_sentence_id": 518, "edu_l1_label": "IOS"}, {"txt": " 4D and E).", "language": "english", "position": {"atoms": [{"position_id": 8585, "txt": " ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[36]/a[1]"}, {"position_id": 8587, "txt": "4D", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[36]/a[2]"}, {"position_id": 8589, "txt": " and ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[36]/a[2]"}, {"position_id": 8591, "txt": "E", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[36]/a[3]"}, {"position_id": 8593, "txt": ").", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[36]/a[3]"}]}, "tags": [], "label": "content", "web_segment_id": 217, "global_sentence_id": 519, "edu_l1_label": "IOS"}, {"txt": " These results suggest that MagMboI can introduces DSBs in DSB-cold NDRs as well as in DSB-hot NDRs.", "language": "english", "position": {"atoms": [{"position_id": 8594, "txt": " These results suggest that MagMboI can introduces DSBs in DSB-cold NDRs as well as in DSB-hot NDRs.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[36]/a[3]"}]}, "tags": [], "label": "content", "web_segment_id": 217, "global_sentence_id": 520, "edu_l1_label": "IOS"}, {"txt": "To further confirm this feature, we examined the frequency of MagMboI-COs in specific chromosomal regions where meiotic recombination is suppressed.", "language": "english", "position": {"atoms": [{"position_id": 8596, "txt": "To further confirm this feature, we examined the frequency of MagMboI-COs in specific chromosomal regions where meiotic recombination is suppressed.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]"}]}, "tags": [], "label": "content", "web_segment_id": 218, "global_sentence_id": 521, "edu_l1_label": "IOS"}, {"txt": " In this study, COs involving the rDNA region were quantified based on a single event when a shift in chromosome origin was identified at the boundary of the rDNA region.", "language": "english", "position": {"atoms": [{"position_id": 8597, "txt": " In this study, COs involving the rDNA region were quantified based on a single event when a shift in chromosome origin was identified at the boundary of the rDNA region.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]"}]}, "tags": [], "label": "content", "web_segment_id": 218, "global_sentence_id": 522, "edu_l1_label": "IOS"}, {"txt": " As a result, consecutive COs occurring through the rDNA region, if present, remain undetectable under this approach.", "language": "english", "position": {"atoms": [{"position_id": 8598, "txt": " As a result, consecutive COs occurring through the rDNA region, if present, remain undetectable under this approach.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]"}]}, "tags": [], "label": "content", "web_segment_id": 218, "global_sentence_id": 523, "edu_l1_label": "IOS"}, {"txt": " The centromere-proximal (±10 kb) regions and rDNA are chromosomal regions where Spo11-induced DSBs are hardly detected [6].", "language": "english", "position": {"atoms": [{"position_id": 8599, "txt": " The centromere-proximal (±10 kb) regions and rDNA are chromosomal regions where Spo11-induced DSBs are hardly detected [", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]"}, {"position_id": 8601, "txt": "6", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]/a[1]"}, {"position_id": 8603, "txt": "].", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]/a[1]"}]}, "tags": [], "label": "content", "web_segment_id": 218, "global_sentence_id": 524, "edu_l1_label": "IOS"}, {"txt": " The proportions of these regions in the genome are 1.3% and 11.3%, respectively (indicated by yellow bars in Fig.", "language": "english", "position": {"atoms": [{"position_id": 8604, "txt": " The proportions of these regions in the genome are 1.3% and 11.3%, respectively (indicated by yellow bars in Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]/a[1]"}]}, "tags": [], "label": "content", "web_segment_id": 218, "global_sentence_id": 525, "edu_l1_label": "IOS"}, {"txt": " 4F), and these proportions are the expected CO frequencies if COs occurred uniformly across all chromosomes.", "language": "english", "position": {"atoms": [{"position_id": 8605, "txt": " ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]/a[1]"}, {"position_id": 8607, "txt": "4F", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]/a[2]"}, {"position_id": 8609, "txt": "), and these proportions are the expected CO frequencies if COs occurred uniformly across all chromosomes.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]/a[2]"}]}, "tags": [], "label": "content", "web_segment_id": 218, "global_sentence_id": 526, "edu_l1_label": "IOS"}, {"txt": " Spo11-COs (gray bars) are about 0.9% in the centromere-proximal region and about 0.1% in rDNA, which is lower than the expected frequencies, indicating that recombination is suppressed (Fig.", "language": "english", "position": {"atoms": [{"position_id": 8610, "txt": " Spo11-COs (gray bars) are about 0.9% in the centromere-proximal region and about 0.1% in rDNA, which is lower than the expected frequencies, indicating that recombination is suppressed (Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]/a[2]"}]}, "tags": [], "label": "content", "web_segment_id": 218, "global_sentence_id": 527, "edu_l1_label": "IOS"}, {"txt": " 4F).", "language": "english", "position": {"atoms": [{"position_id": 8611, "txt": " ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]/a[2]"}, {"position_id": 8613, "txt": "4F", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]/a[3]"}, {"position_id": 8615, "txt": ").", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]/a[3]"}]}, "tags": [], "label": "content", "web_segment_id": 218, "global_sentence_id": 528, "edu_l1_label": "IOS"}, {"txt": " On the other hand, the frequency of MagMboI-COs is 1.8% at the centromere-proximal region, which is comparable to the expected frequency.", "language": "english", "position": {"atoms": [{"position_id": 8616, "txt": " On the other hand, the frequency of MagMboI-COs is 1.8% at the centromere-proximal region, which is comparable to the expected frequency.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]/a[3]"}]}, "tags": [], "label": "content", "web_segment_id": 218, "global_sentence_id": 529, "edu_l1_label": "IOS"}, {"txt": " In the rDNA region, the frequency of MagMboI-COs is 1.4%, about eight-fold lower than the expected frequency, but still 14-fold higher than the frequency of Spo11-COs (Fig.", "language": "english", "position": {"atoms": [{"position_id": 8617, "txt": " In the rDNA region, the frequency of MagMboI-COs is 1.4%, about eight-fold lower than the expected frequency, but still 14-fold higher than the frequency of Spo11-COs (Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]/a[3]"}]}, "tags": [], "label": "content", "web_segment_id": 218, "global_sentence_id": 530, "edu_l1_label": "IOS"}, {"txt": " 4F).", "language": "english", "position": {"atoms": [{"position_id": 8618, "txt": " ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]/a[3]"}, {"position_id": 8620, "txt": "4F", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]/a[4]"}, {"position_id": 8622, "txt": ").", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[37]/a[4]"}]}, "tags": [], "label": "content", "web_segment_id": 218, "global_sentence_id": 531, "edu_l1_label": "IOS"}, {"txt": " These results suggest that MagMboI-induced DSBs are much less influenced by recombination suppression in centromere-proximal and rDNA regions.", "language": 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" Comparative analysis with the reference genome showed tandem DUPs in chromosomes II and XVI (Fig.", "language": "english", "position": {"atoms": [{"position_id": 8638, "txt": " Comparative analysis with the reference genome showed tandem DUPs in chromosomes II and XVI (Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[38]/em"}]}, "tags": ["em"], "label": "content", "web_segment_id": 220, "global_sentence_id": 537, "edu_l1_label": "IOS"}, {"txt": " 5A and B, named DUP1 and DUP2, respectively).", "language": "english", "position": {"atoms": [{"position_id": 8639, "txt": " ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[38]/em"}, {"position_id": 8641, "txt": "5A", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[38]/a[1]"}, {"position_id": 8643, "txt": " and ", "x": 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Magnified views of comparison for chromosome II and XVI show tandem DUPs (DUP1 and DUP2) indicated by arrows.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[8]/div/div/div[2]/p/em"}]}, "tags": ["em"], "label": "figure_title", "web_segment_id": 223, "global_sentence_id": 546, "edu_l1_label": "EDU_O"}, {"txt": " (B) Schematic diagram of recombined chromosomes in mm15.", "language": "english", "position": {"atoms": [{"position_id": 8669, "txt": " (", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[8]/div/div/div[2]/p/em"}, {"position_id": 8671, "txt": "B", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[8]/div/div/div[2]/p/strong[2]"}, {"position_id": 8673, "txt": ") Schematic diagram of recombined chromosomes in mm15.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[8]/div/div/div[2]/p/strong[2]"}]}, "tags": ["strong", "em"], "label": "figure_title", "web_segment_id": 223, "global_sentence_id": 547, "edu_l1_label": "EDU_O"}, {"txt": " DUP1 and DUP2 regions are shown in the boxes.", "language": "english", "position": {"atoms": [{"position_id": 8674, "txt": " DUP1 and DUP2 regions are shown in the boxes.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[8]/div/div/div[2]/p/strong[2]"}]}, "tags": ["strong"], "label": "figure_title", "web_segment_id": 223, "global_sentence_id": 548, "edu_l1_label": "EDU_O"}, {"txt": " (C) Magnified views of DUP1 and DUP2.", "language": "english", "position": {"atoms": [{"position_id": 8675, "txt": " (", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[8]/div/div/div[2]/p/strong[2]"}, {"position_id": 8677, "txt": "C", "x": 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"71", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[39]/a[1]"}, {"position_id": 8690, "txt": "], a recovery of meiotic cells from sporulation culture to the vegetative mitotic cell cycle in a nutrient-rich condition, was employed to analyze the formation of chromosomal abnormalities during meiosis I.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[39]/a[1]"}]}, "tags": [], "label": "content", "web_segment_id": 225, "global_sentence_id": 554, "edu_l1_label": "IOS"}, {"txt": " In RTG experiments, meiotic cells exposed to blue light were immediately transferred to nutrient-rich plates to isolate MagTAQed RTG cells (Fig.", "language": "english", "position": {"atoms": [{"position_id": 8691, "txt": " In RTG experiments, meiotic cells exposed to blue light were immediately transferred to nutrient-rich plates to isolate MagTAQed RTG cells (Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[39]/a[1]"}]}, "tags": [], "label": "content", "web_segment_id": 225, "global_sentence_id": 555, "edu_l1_label": "IOS"}, {"txt": " 6A).", "language": "english", "position": {"atoms": [{"position_id": 8692, "txt": " ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[39]/a[1]"}, {"position_id": 8694, "txt": "6A", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[39]/a[2]"}, {"position_id": 8696, "txt": ").", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[39]/a[2]"}]}, "tags": [], "label": "content", "web_segment_id": 225, "global_sentence_id": 556, "edu_l1_label": "IOS"}, {"txt": " The genome analysis revealed MagTAQed RTG isolates underwent multiple LOHs due to HR (Supplementary Fig.", "language": "english", "position": {"atoms": [{"position_id": 8697, "txt": " The genome analysis revealed MagTAQed RTG isolates underwent multiple LOHs due to HR (", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[39]/a[2]"}, {"position_id": 8699, "txt": "Supplementary Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[39]/span[4]/a"}]}, "tags": [], "label": "content", "web_segment_id": 225, "global_sentence_id": 557, "edu_l1_label": "IOS"}, {"txt": " S17 and Supplementary Table S4).", "language": "english", "position": {"atoms": [{"position_id": 8700, "txt": " S17", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[39]/span[4]/a"}, {"position_id": 8702, "txt": " and ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[39]/span[4]"}, {"position_id": 8704, "txt": "Supplementary Table S4", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[39]/span[6]/a"}, {"position_id": 8706, "txt": ").", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[39]/span[6]"}]}, "tags": [], "label": "content", "web_segment_id": 225, "global_sentence_id": 558, "edu_l1_label": "IOS"}, {"txt": " Since recombination does not occur in spo11Δ [42, 72], we conclude that MagMboI indeed induced recombination in the RTG experiment.", "language": "english", "position": {"atoms": [{"position_id": 8707, "txt": " Since recombination does not occur in ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[39]/span[6]"}, {"position_id": 8709, "txt": "spo11Δ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[39]/em"}, {"position_id": 8711, "txt": " [", "x": 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"/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[9]/div/div/div[2]/p"}, {"position_id": 8726, "txt": "A", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[9]/div/div/div[2]/p/strong[1]"}, {"position_id": 8728, "txt": ") A schematic diagram of RTG experiment to isolate the diploid strains with rearranged chromosomes induced by MagMboI.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[9]/div/div/div[2]/p/strong[1]"}]}, "tags": ["strong"], "label": "figure_title", "web_segment_id": 227, "global_sentence_id": 562, "edu_l1_label": "EDU_O"}, {"txt": " (B) NAHRs between heterologous chromosomes in RTG8 and 31. 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NAHR between homologous chromosomes in RTG46.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[9]/div/div/div[2]/p/strong[2]"}]}, "tags": ["strong"], "label": "figure_title", "web_segment_id": 227, "global_sentence_id": 563, "edu_l1_label": "EDU_O"}, {"txt": " (C) Circos plots of SGCs, BIRs, NMTLs, and NAHRs within MagTAQed RTG isolates.", "language": "english", "position": {"atoms": [{"position_id": 8734, "txt": " (", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[9]/div/div/div[2]/p/strong[2]"}, {"position_id": 8736, "txt": "C", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/div[9]/div/div/div[2]/p/strong[3]"}, {"position_id": 8738, "txt": ") Circos plots of SGCs, BIRs, NMTLs, and NAHRs within MagTAQed RTG isolates.", "x": 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{"txt": " These results suggest that NAHRs are presumed to induce nondisjunction of chromosomes and genomic instability during sporulation, possibly leading to a decrease in spore viability.", "language": "english", "position": {"atoms": [{"position_id": 8836, "txt": " These results suggest that NAHRs are presumed to induce nondisjunction of chromosomes and genomic instability during sporulation, possibly leading to a decrease in spore viability.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[41]/a[4]"}]}, "tags": [], "label": "content", "web_segment_id": 229, "global_sentence_id": 582, "edu_l1_label": "IOS"}, {"txt": "Discussion", "language": "english", "position": {"atoms": [{"position_id": 8838, "txt": "Discussion", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/h2[5]"}]}, "tags": ["h2"], "label": "title1", "web_segment_id": 230, "global_sentence_id": 583, "edu_l1_label": "BOS"}, {"txt": "Development of optogenetic system conditionally inducing large-scale genome rearrangements", "language": "english", "position": {"atoms": [{"position_id": 8840, "txt": "Development of optogenetic system conditionally inducing large-scale genome rearrangements", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/h3[22]"}]}, "tags": ["h3"], "label": "title2", "web_segment_id": 231, "global_sentence_id": 584, "edu_l1_label": "IOS"}, {"txt": "We developed a photoactivatable endonuclease MagMboI, which allows conditional induction of large-scale genome rearrangements.", "language": "english", "position": {"atoms": [{"position_id": 8842, "txt": "We developed a photoactivatable endonuclease MagMboI, which allows conditional induction of large-scale genome rearrangements.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[42]"}]}, "tags": [], "label": "content", "web_segment_id": 232, "global_sentence_id": 585, "edu_l1_label": "IOS"}, {"txt": " Regarding the kinetics of photoactivation, it was confirmed that DNA cleavage ability of MagMboI can be activated within 30 min after light exposure and loses activity within 12 h after the light shielding (Fig.", "language": "english", "position": {"atoms": [{"position_id": 8843, "txt": " Regarding the kinetics of photoactivation, it was confirmed that DNA cleavage ability of MagMboI can be activated within 30 min after light exposure and loses activity within 12 h after the light shielding (Fig.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[42]"}]}, "tags": [], "label": "content", "web_segment_id": 232, "global_sentence_id": 586, "edu_l1_label": "IOS"}, {"txt": " 1G and H).", "language": "english", "position": {"atoms": [{"position_id": 8844, "txt": " ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[42]"}, {"position_id": 8846, "txt": "1G", "x": 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"/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[42]/a[3]"}]}, "tags": ["em"], "label": "content", "web_segment_id": 232, "global_sentence_id": 588, "edu_l1_label": "IOS"}, {"txt": "There are several technologies related to MagTAQing, such as SCRaMbLE (Synthetic Chromosome Rearrangement and Modification by LoxP-mediated Evolution) [74] and multi-target CRISPR/Cas9 [75–77].", "language": "english", "position": {"atoms": [{"position_id": 8865, "txt": "There are several technologies related to MagTAQing, such as SCRaMbLE (Synthetic Chromosome Rearrangement and Modification by LoxP-mediated Evolution) [", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[43]"}, {"position_id": 8867, "txt": "74", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[43]/a[1]"}, {"position_id": 8869, "txt": "] and multi-target CRISPR/Cas9 [", "x": 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"label": "content", "web_segment_id": 233, "global_sentence_id": 590, "edu_l1_label": "IOS"}, {"txt": " Multi-target CRISPR/Cas9 reportedly induces structural variants such as TLs by targeting transposons, centromeres, and other repetitive sequences.", "language": "english", "position": {"atoms": [{"position_id": 8875, "txt": " Multi-target CRISPR/Cas9 reportedly induces structural variants such as TLs by targeting transposons, centromeres, and other repetitive sequences.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[43]/a[2]"}]}, "tags": [], "label": "content", "web_segment_id": 233, "global_sentence_id": 591, "edu_l1_label": "IOS"}, {"txt": " However, it is challenging to induce random rearrangements across all chromosomal regions.", "language": "english", "position": {"atoms": [{"position_id": 8876, "txt": " However, it is challenging to induce random rearrangements across all chromosomal regions.", "x": 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applied to meiosis.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[45]/a[2]"}]}, "tags": [], "label": "content", "web_segment_id": 236, "global_sentence_id": 602, "edu_l1_label": "IOS"}, {"txt": " In contrast, activation of MagMboI requires only blue light exposure, which has very low invasiveness to meiotic yeast cells.", "language": "english", "position": {"atoms": [{"position_id": 8918, "txt": " In contrast, activation of MagMboI requires only blue light exposure, which has very low invasiveness to meiotic yeast cells.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[45]/a[2]"}]}, "tags": [], "label": "content", "web_segment_id": 236, "global_sentence_id": 603, "edu_l1_label": "IOS"}, {"txt": " We introduced MagMboI into Spo11-deficient meiotic cells to examine differences in DNA repair and genome rearrangements between mitosis and meiosis.", "language": "english", "position": {"atoms": [{"position_id": 8919, "txt": " We introduced MagMboI into Spo11-deficient meiotic cells to examine differences in DNA repair and genome rearrangements between mitosis and meiosis.", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[45]/a[2]"}]}, "tags": [], "label": "content", "web_segment_id": 236, "global_sentence_id": 604, "edu_l1_label": "IOS"}, {"txt": " MagTAQed meiotic cells underwent a higher frequency of NAHRs leading to interchromosomal TLs and tandem DUPs in homologous regions than mitotic cells (Figs 5 and 6B–E).", "language": "english", "position": {"atoms": [{"position_id": 8920, "txt": " MagTAQed meiotic cells underwent a higher frequency of NAHRs leading to interchromosomal TLs and tandem DUPs in homologous regions than mitotic cells (Figs ", "x": "/html/body/div[1]/div[2]/section/div/div[2]/div[3]/div[3]/div[3]/div[2]/div[1]/div/div/p[45]/a[2]"}, {"position_id": 8922, "txt": "5", "x": 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# Light-controlled Spo11-less meiotic DNA breaks by MagTAQing lead to chromosomal aberrations 
## Abstract
## Graphical Abstract
## Introduction
## Materials and methods
### Yeast strains and culture
### Construction of photoactivatable restriction enzyme
### Blue light
### Spot assay
### Quantification of the fraction of cleaved DNA
### Western blotting
### Protein structure prediction with AlphaFold2
### MagTAQing for mitotic cells
### Illumina short-read sequencing
### Mutation detection pipeline for diploid mutants
### MagTAQing for meiotic cells
### Random spore analysis
### Mutation detection pipeline for haploid spores
### Nanopore long-read sequencing and de novo assembly
### Comparison of COs with chromatin features
## Results
### Development of photoactivatable MboI restriction enzyme MagMboI
### Chromosomal rearrangements induced by MagMboI in mitotic cells
### Expression of MagMboI in meiotic cells
### Meiotic recombinations in viable MagTAQed spores
### Noncanonical recombinations between repetitive sequences
### Chromosomal aberrations in return-to-growth isolates
## Discussion
### Development of optogenetic system conditionally inducing large-scale genome rearrangements
### Comparison of genome rearrangements induced by MagMboI during mitosis and meiosis
### Differences in consequence of DSBs induced by Spo11 and MagMboI
### Species-dependent response to artificial DSBs in spo11 deficient cells
### Spo11-independent recombination and chromosomal instability
