update the _compute function to use the seametrics library (#3)

- update the _compute function to use the seametrics library (a637b07f292ec7f2cbb71120ed0ee2456df9221f)

user-friendly-metrics.py

@@ -20,6 +20,8 @@ from motmetrics.metrics import (events_to_df_map,
                                 track_ratios)
 import numpy as np
 
+from seametrics.user_friendly.utils import calculate_from_payload
+
 _CITATION = """\
 @InProceedings{huggingface:module,
 title = {A great new module},
@@ -97,219 +99,3 @@ class UserFriendlyMetrics(evaluate.Metric):
         return calculate_from_payload(payload, max_iou, filters, recognition_thresholds, debug) 
         #return calculate(predictions, references, max_iou)
 
-def recognition(track_ratios, th = 0.5):
-    """Number of objects tracked for at least 20 percent of lifespan."""
-    return track_ratios[track_ratios >= th].count()
-
-def num_gt_ids(df):
-    """Number of unique gt ids."""
-    return df.full["OId"].dropna().unique().shape[0]
-
-def calculate(predictions, 
-              references, 
-              max_iou: float = 0.5,
-              recognition_thresholds: list = [0.3, 0.5, 0.8]
-            ):
-    
-    """Returns the scores"""
-    
-    try: 
-        np_predictions = np.array(predictions)
-    except:
-        raise ValueError("The predictions should be a list of np.arrays in the format [frame number, object id, bb_left, bb_top, bb_width, bb_height, confidence]")
-    
-    try:
-        np_references = np.array(references)
-    except:
-        raise ValueError("The references should be a list of np.arrays in the format [frame number, object id, bb_left, bb_top, bb_width, bb_height]")
-    
-    if np_predictions.shape[1] != 7:
-        raise ValueError("The predictions should be a list of np.arrays in the format [frame number, object id, bb_left, bb_top, bb_width, bb_height, confidence]")
-    if np_references.shape[1] != 6:
-        raise ValueError("The references should be a list of np.arrays in the format [frame number, object id, bb_left, bb_top, bb_width, bb_height]")
-
-    if np_predictions[:, 0].min() <= 0:
-        raise ValueError("The frame number in the predictions should be a positive integer")
-    if np_references[:, 0].min() <= 0:
-        raise ValueError("The frame number in the references should be a positive integer")
-
-    num_frames = int(max(np_references[:, 0].max(), np_predictions[:, 0].max()))
-
-    acc = mm.MOTAccumulator(auto_id=True)
-    for i in range(1, num_frames+1):
-        preds = np_predictions[np_predictions[:, 0] == i, 1:6]
-        refs = np_references[np_references[:, 0] == i, 1:6]
-        C = mm.distances.iou_matrix(refs[:,1:], preds[:,1:], max_iou = 1-max_iou) #motmetrics expects iou association threshold to be smaller for stricter association
-        acc.update(refs[:,0].astype('int').tolist(), preds[:,0].astype('int').tolist(), C)
-
-    mh = mm.metrics.create()
-    summary = mh.compute(acc, metrics=['num_misses', 'num_false_positives', 'num_detections']).to_dict()
-
-    df = events_to_df_map(acc.events)
-    tr_ratios = track_ratios(df, obj_frequencies(df))
-    unique_gt_ids = num_gt_ids(df)
-
-    namemap = {"num_misses": "fn",
-                "num_false_positives": "fp",
-                "num_detections": "tp"}
-    
-    for key in list(summary.keys()):
-        if key in namemap:
-            summary[namemap[key]] = float(summary[key][0])
-            summary.pop(key)
-        else:
-            summary[key] = float(summary[key][0])
-
-    summary["num_gt_ids"] = unique_gt_ids
-
-    for th in recognition_thresholds:
-        recognized = recognition(tr_ratios, th)
-        summary[f'recognized_{th}'] = int(recognized)
-    
-    return summary
-
-def build_metrics_template(models, filters):
-    metrics_dict = {}
-    for model in models:
-        metrics_dict[model] = {}
-        metrics_dict[model]["all"] = {}
-        for filter, filter_ranges in filters.items():
-            metrics_dict[model][filter] = {}
-            for filter_range in filter_ranges:
-                filter_range_name = filter_range[0]
-                metrics_dict[model][filter][filter_range_name] = {}
-    return metrics_dict
-
-    
-def calculate_from_payload(payload: dict, 
-                           max_iou: float = 0.5,
-                           filters = {},
-                           recognition_thresholds = [0.3, 0.5, 0.8], 
-                           debug: bool = False):
-    
-    if not isinstance(payload, dict):
-        try:
-            payload = payload.to_dict()
-        except Exception as e:
-            raise ValueError(
-                "The payload should be a dictionary or a compatible object"
-            ) from e
-    gt_field_name = payload['gt_field_name']
-    models = payload['models']
-    sequence_list = payload['sequence_list']
-
-    if debug:
-        print("gt_field_name: ", gt_field_name)
-        print("models: ", models)
-        print("sequence_list: ", sequence_list)
-
-    metrics_per_sequence = {}
-    metrics_global = build_metrics_template(models, filters)
-
-    for sequence in sequence_list:
-        metrics_per_sequence[sequence] = {}
-        frames = payload['sequences'][sequence][gt_field_name]
-        
-        all_formated_references = {"all": []}
-        for filter, filter_ranges in filters.items():
-            all_formated_references[filter] = {}
-            for filter_range in filter_ranges:
-                filter_range_name = filter_range[0]
-                all_formated_references[filter][filter_range_name] = []
-
-        for frame_id, frame in enumerate(frames):
-            for detection in frame:
-                index = detection['index']
-                x, y, w, h = detection['bounding_box']
-                all_formated_references["all"].append([frame_id+1, index, x, y, w, h])  
-                
-                for filter, filter_ranges in filters.items():
-                    filter_value = detection[filter]
-                    for filter_range in filter_ranges:
-                        filter_range_name, filter_range_limits = filter_range[0], filter_range[1]
-                        if filter_value >= filter_range_limits[0] and filter_value <= filter_range_limits[1]:
-                            all_formated_references[filter][filter_range_name].append([frame_id+1, index, x, y, w, h])
-
-        metrics_per_sequence[sequence] = build_metrics_template(models, filters)
-
-        for model in models:
-            frames = payload['sequences'][sequence][model]
-            formated_predictions = []
-            
-            for frame_id, frame in enumerate(frames):
-                for detection in frame:
-                    index = detection['index']
-                    x, y, w, h = detection['bounding_box']
-                    confidence = 1
-                    formated_predictions.append([frame_id+1, index, x, y, w, h, confidence])
-            
-            if debug:
-                print("sequence/model: ", sequence, model)
-                print("formated_predictions: ", formated_predictions)
-                print("formated_references: ", all_formated_references)
-            
-            if len(formated_predictions) == 0:
-                metrics_per_sequence[sequence][model] = "Model had no predictions."
-            elif len(all_formated_references["all"]) == 0:
-                metrics_per_sequence[sequence][model] = "No ground truth."
-            
-            else:
-
-                sequence_metrics = calculate(formated_predictions, all_formated_references["all"], max_iou=max_iou, recognition_thresholds = recognition_thresholds)
-                sequence_metrics = realize_metrics(sequence_metrics, recognition_thresholds)
-                metrics_per_sequence[sequence][model]["all"] = sequence_metrics
-
-                metrics_global[model]["all"] = sum_dicts(metrics_global[model]["all"], sequence_metrics)
-                metrics_global[model]["all"] = realize_metrics(metrics_global[model]["all"], recognition_thresholds)
-                                
-                for filter, filter_ranges in filters.items():
-
-                    for filter_range in filter_ranges:
-                        
-                        filter_range_name = filter_range[0]
-                        sequence_metrics = calculate(formated_predictions, all_formated_references[filter][filter_range_name], max_iou=max_iou, recognition_thresholds = recognition_thresholds)
-                        sequence_metrics = realize_metrics(sequence_metrics, recognition_thresholds)
-                        metrics_per_sequence[sequence][model][filter][filter_range_name] = sequence_metrics
-
-                        metrics_global[model][filter][filter_range_name] = sum_dicts(metrics_global[model][filter][filter_range_name], sequence_metrics)
-                        metrics_global[model][filter][filter_range_name] = realize_metrics(metrics_global[model][filter][filter_range_name], recognition_thresholds)
-    
-    output = {"global": metrics_global, "per_sequence": metrics_per_sequence}
-    
-    return output
-
-def sum_dicts(dict1, dict2):
-    """
-    Recursively sums the numerical values in two nested dictionaries.
-    """
-    result = {}
-    for key in dict1.keys() | dict2.keys():  # Union of keys from both dictionaries
-        val1 = dict1.get(key, 0)
-        val2 = dict2.get(key, 0)
-        if isinstance(val1, dict) and isinstance(val2, dict):
-            # If both values are dictionaries, recursively sum them
-            result[key] = sum_dicts(val1, val2)
-        elif isinstance(val1, (int, float)) and isinstance(val2, (int, float)):
-            # If both are numbers, sum them
-            result[key] = val1 + val2
-        else:
-            # If only one dictionary has the key, take the non-zero value
-            result[key] = val1 if val1 != 0 else val2
-    return result
-
-def realize_metrics(metrics_dict, 
-                   recognition_thresholds):
-    """
-    calculates metrics based on raw metrics
-    """
-    
-    metrics_dict["precision"] = metrics_dict["tp"]/(metrics_dict["tp"]+metrics_dict["fp"])
-    metrics_dict["recall"] = metrics_dict["tp"]/(metrics_dict["tp"]+metrics_dict["fn"])
-
-    metrics_dict["f1"] = 2*metrics_dict["precision"]*metrics_dict["recall"]/(metrics_dict["precision"]+metrics_dict["recall"]+1e-6)
-
-    for th in recognition_thresholds:
-        metrics_dict[f"recognition_{th}"] = metrics_dict[f"recognized_{th}"]/metrics_dict["num_gt_ids"]
-        
-    return metrics_dict
-